Man pages for SinomeM/QCtreeCNV
Reducing the visual inspection effort in CNV calling
| cnvr_fast | Compute Copy Number Variable Regions (CNVRs) |
| cnvrs_create | Compute Copy Number Variable Regions (CNVRs) |
| export_cnvs | Export putative CNV calls for Visual Inspection |
| extractMetrics | Extratc QC metrics |
| extractRDS | Extratc Raw Data in Specific Loci |
| get_region_tabix | Load raw data from tabix indexed intensity file |
| hg18_chr_arms | Start and end of all chromosome arms in the assembly hg18 |
| hg18_start_end_centromeres | Start, end and centromere position of all chromosomes in the... |
| hg19_chr_arms | Start and end of all chromosome arms in the assembly hg19 |
| hg19_start_end_centromeres | Start, end and centromere position of all chromosomes in the... |
| hg38_chr_arms | Start and end of all chromosome arms in the assembly hg38 |
| hg38_start_end_centromeres | Start, end and centromere position of all chromosomes in the... |
| qc_plots_cnvs | Create Quality Control plots for the filtering pipeline |
| qctree | CNVs QC Filtering Tree |
| qctree_pre | QCtree pipeline in a convenient and automated form |
| saveCNVplots | Save CNVs plots for Visual Inspection |
| select_stitch_calls | Select calls in loci and stich close calls |
