Man pages for SpTB/wztools
Convenient functions for analysis and simulation
| add_cov_stats_ind | Adds columns specifying true mu, 95% coverage, bias and... |
| add_cov_stats_mu | Adds columns specifying true mu, 95% coverage, bias and... |
| add_fixed_pars | add fixed pars to stan list |
| add_gammas | Add gamma pars from model_struct_list to stan_list |
| add_ranges | Add ranges to stan list |
| add_vars_from_stan_list_to_model_output | Adds variables from stan_list to to stan model summary (3-D,... |
| beta_mean | Estimate mean of the beta distribution |
| beta_sd | Estimate the standard deviation of the Beta distribution |
| calc_loo | Calculate LOOIC of a cmdstan model object |
| calc_waic | Calculate WAIC (and llpd) of a cmdstan model object |
| compile_model | Compiles a stan model (wrapper for cmdstanr::cmdstanmodel()) |
| decay_exp | Exponential Decay |
| decay_hyper | Hyperbolic decay |
| decay_qhyper | Quasi-hyperbolic decay |
| draw_from_beta_hypers | Draw individual parameters from beta-transformed... |
| draw_mu_from_gamma | Title |
| estBetaParams | Estimate alpha and beta parameters of the Beta distribution... |
| extract_loos | Extract LOOIC values from all models in your targets folder... |
| extract_preds | Extract simulated variables from the generated quantities... |
| extract_waics | Extract WAIC values from all models in your targets folder... |
| fit_model | Fit a stan model with cmdstanr default fitting setup |
| fit_model_gen | Simulate a synthetic dataset using a stan model and a... |
| get_inds | Filters cmdstan fit summary dataframe for mu values and adds... |
| get_inds2 | Extract individual parameters from cmdstanr model summary... |
| get_mus | Filters cmdstan fit summary dataframe for mu values and adds... |
| get_mus2 | Extract group-level mean parameters (mus) from cmdstanr model... |
| get_sim_mu_sds | Calculate sd's for each group parameter |
| growth_hyper | Hyperbolic growth |
| kalman | Kalman filter |
| loadRData | Rdata Loader |
| make_fixed_pars_list | Creates a list of fixed parameters |
| make_stan_list | Making a stan-compatible data list |
| make_stan_skeleton | Builds a stan-model skeleton, specifying priors, their... |
| model_comp_table | Creates a table of loo/waic scores based on loo lists from... |
| pars_to_stan | Adds individual parameters from task skeleton to a stan list |
| plot_mu_on_acc | Interatively plots task accuracies based on different levels... |
| setGGoptions | Set GG options |
| setOptions | Setting various options |
| sigm_drift | Sigmoidal drift-rate transform (based on:... |
| sim | 10-subject data simulation |
| sim_ind_pars | Simulate individual parameters from beta-like group-level... |
| sim_ind_pars_multi | Simulate individual parameters from beta-like group-level... |
| sim_mus | Simulate group means (mus) from beta-like priors |
| sim_mus2 | Title |
| sim_raw_inds_from_ab | simulates raw individual parameter values (in beta space)... |
| sim_raw_pars_from_ab | Simulates raw group parameter values (in beta space) from... |
| single_subj_sim | Single subject data simulation |
| softmax | Softmax function (2 values) |
| softmax2 | Softmax function (2 values) |
| softmax_inverse | Softmax (2 values, with inverted tau) |
| softplus | Softplus transformation from (-Inf +Inf) to (0, +Inf) |
| sourceAll | Sources all the code within given folder + file name pattern |
| thompson | Thompson sampling (normal or beta (moment-matching method)) |
| varToStr | Variable name to string conversion |
| widen_preds | Widens prediction dataframe (useful when 2+ prediction... |
