Files in Stasharofi/ypssc
Yeast-Proteome Secondary-Structure Calculator
.Rbuildignore
.Rproj.user/708849A4/build_options
.Rproj.user/708849A4/cpp-definition-cache
.Rproj.user/708849A4/pcs/debug-breakpoints.pper
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.Rproj.user/shared/notebooks/patch-chunk-names
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.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/Err.R
R/auxil.R
R/calculationAlphaHelix.R
R/calculationBetaSheet.R
R/calculationChain.R
R/exit.R
R/findAlpha.R
R/findBeta.R
R/findChain.R
R/findSecondary.R
R/sysdata.rda
R/ypssc-package.R
README.md
auxil/CRAN-RELEASE
auxil/LFS.md
auxil/README.md
auxil/code_help.txt
auxil/code_submitting_cran.txt
auxil/code_test.txt
auxil/dataBases/dataBase_numOfAA.csv
auxil/dataBases/dataBase_reduced.csv
auxil/dataBases/dataBase_small.csv
auxil/data_backup/dataBase_alpha.rda
auxil/data_backup/dataBase_beta.rda
auxil/data_backup/dataBase_chain.rda
auxil/data_backup/dataBase_numOfAA.rda
auxil/data_backup/dataBase_small.rda
auxil/documentation/descriptions.docx
auxil/documentation/yeastAlphaHelixCalculator.docx
auxil/documentation/yeastBetaSheetCalculator.docx
auxil/documentation/yeastChianCalculator.docx
auxil/documentation/yeastSecondaryStructureCalculator.docx
auxil/documentation/ypssc.pdf
auxil/inputFilesSample/exampleInputFile.csv
auxil/inputFilesSample/exampleInputFileSmall.csv
auxil/inputFilesSample/exampleInputFileSmall.xlsx
auxil/papers/MaxQuant.pdf
auxil/papers/NetSurfP-2.0.pdf
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_List_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_List_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_alpha_helix_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_beta_sheet_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_chain_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211110_151148_secondary/20211110_151148_df.csv
auxil/ypssc_results/ypssc_20211110_152116_alpha/20211110_152116_List_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152116_alpha/20211110_152116_List_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152116_alpha/20211110_152116_alpha_helix_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152116_alpha/20211110_152116_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211110_152116_alpha/20211110_152116_df.csv
auxil/ypssc_results/ypssc_20211110_152528_beta/20211110_152528_List_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152528_beta/20211110_152528_List_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152528_beta/20211110_152528_beta_sheet_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152528_beta/20211110_152528_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211110_152528_beta/20211110_152528_df.csv
auxil/ypssc_results/ypssc_20211110_152700_chain/20211110_152700_List_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152700_chain/20211110_152700_List_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152700_chain/20211110_152700_chain_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211110_152700_chain/20211110_152700_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211110_152700_chain/20211110_152700_df.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_alpha_helix_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_beta_sheet_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_chain_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_df.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_list_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_031516_secondary/20211116_031516_list_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_050336_alpha/20211116_050336_alpha_helix_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_050336_alpha/20211116_050336_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211116_050336_alpha/20211116_050336_df.csv
auxil/ypssc_results/ypssc_20211116_050336_alpha/20211116_050336_list_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_050336_alpha/20211116_050336_list_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_051851_beta/20211116_051851_beta_sheet_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_051851_beta/20211116_051851_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211116_051851_beta/20211116_051851_df.csv
auxil/ypssc_results/ypssc_20211116_051851_beta/20211116_051851_list_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_051851_beta/20211116_051851_list_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_052511_chain/20211116_052511_chain_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_052511_chain/20211116_052511_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211116_052511_chain/20211116_052511_df.csv
auxil/ypssc_results/ypssc_20211116_052511_chain/20211116_052511_list_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211116_052511_chain/20211116_052511_list_of_proteins_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211119_094511_beta/20211119_094511_beta_sheet_analysis_of_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211119_094511_beta/20211119_094511_dataBase_numOfAA.csv
auxil/ypssc_results/ypssc_20211119_094511_beta/20211119_094511_df.csv
auxil/ypssc_results/ypssc_20211119_094511_beta/20211119_094511_list_of_peptides_in_ST170_But_O.csv
auxil/ypssc_results/ypssc_20211119_094511_beta/20211119_094511_list_of_proteins_in_ST170_But_O.csv
build/installed_ypssc/ypssc/DESCRIPTION
build/installed_ypssc/ypssc/INDEX
build/installed_ypssc/ypssc/Meta/Rd.rds
build/installed_ypssc/ypssc/Meta/features.rds
build/installed_ypssc/ypssc/Meta/hsearch.rds
build/installed_ypssc/ypssc/Meta/links.rds
build/installed_ypssc/ypssc/Meta/nsInfo.rds
build/installed_ypssc/ypssc/Meta/package.rds
build/installed_ypssc/ypssc/NAMESPACE
build/installed_ypssc/ypssc/R/sysdata.rdb
build/installed_ypssc/ypssc/R/sysdata.rdx
build/installed_ypssc/ypssc/R/ypssc
build/installed_ypssc/ypssc/R/ypssc.rdb
build/installed_ypssc/ypssc/R/ypssc.rdx
build/installed_ypssc/ypssc/WORDLIST
build/installed_ypssc/ypssc/extdata/exampleInputFile.csv
build/installed_ypssc/ypssc/help/AnIndex
build/installed_ypssc/ypssc/help/aliases.rds
build/installed_ypssc/ypssc/help/findAlpha.html
build/installed_ypssc/ypssc/help/findBeta.html
build/installed_ypssc/ypssc/help/findChain.html
build/installed_ypssc/ypssc/help/findSecondary.html
build/installed_ypssc/ypssc/help/paths.rds
build/installed_ypssc/ypssc/help/ypssc-package.html
build/installed_ypssc/ypssc/help/ypssc.html
build/installed_ypssc/ypssc/help/ypssc.rdb
build/installed_ypssc/ypssc/help/ypssc.rdx
build/installed_ypssc/ypssc/html/00Index.html
build/installed_ypssc/ypssc/html/R.css
build/installed_ypssc/ypssc/html/findAlpha.html
build/installed_ypssc/ypssc/html/findBeta.html
build/installed_ypssc/ypssc/html/findChain.html
build/installed_ypssc/ypssc/html/findSecondary.html
build/installed_ypssc/ypssc/html/ypssc-package.html
build/zip_ypssc/ypssc_0.1.0.zip
cran-comments.md
data-raw/create_dataBases.R
inst/WORDLIST
inst/extdata/exampleInputFile.csv
man/findAlpha.Rd
man/findBeta.Rd
man/findChain.Rd
man/findSecondary.Rd
man/ypssc-package.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-findAlpha.R
tests/testthat/test-findBeta.R
tests/testthat/test-findChain.R
tests/testthat/test-findSecondary.R
ypssc.Rproj
