Files in StateOfCalifornia/CalCAT
A tool for understanding COVID-19 by the State of California
.Rbuildignore
.gitignore
CalCAT.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/deconvolve_hosp_to_onset_func.R
R/forecast_calc_functions.R
R/get_counties.R
R/get_county_populations.R
R/get_rand_state_number.R
R/get_state_abbrv.R
R/get_state_fips.R
R/grab_dummy_data.R
R/grab_hhs_data.R
R/make_fips_list.R
R/model_output_lists.R
R/nowcast_calc_functions.R
R/read_hhs_covid.R
R/to_time_series.R
R/url_file_exists.R
README.md
cal_cat_data_routine.Rmd
data/AK/can_full_reff_table.csv
data/AK/can_state_reff_table.csv
data/AK/can_strong_scenario.csv
data/AK/can_weak_scenario.csv
data/AK/epi_forecast.csv
data/AK/icl_model.csv
data/AK/icl_rt.csv
data/AK/ihme.csv
data/AK/mit.csv
data/AK/mobs.csv
data/AK/rand_scenarios.csv
data/AK/reich_data.csv
data/AK/rt_live.csv
data/AK/ucla_state.csv
data/AK/ygg.csv
data/AK/ygg_county.csv
data/AK/yugroup.csv
data/AZ/covid_actuals.csv
data/AZ/forecasts/covid_admits_NNETAR.rds
data/AZ/forecasts/covid_admits_arima.rds
data/AZ/forecasts/covid_admits_damped_holts.rds
data/AZ/forecasts/covid_admits_holts.rds
data/AZ/nowcasts/cislaghi.rds
data/AZ/nowcasts/covidestim.rds
data/AZ/nowcasts/jrc.rds
data/CA/can_full_reff_table.csv
data/CA/can_state_reff_table.csv
data/CA/can_strong_scenario.csv
data/CA/can_weak_scenario.csv
data/CA/covid_actuals.csv
data/CA/covid_admits_NNETAR.csv
data/CA/covid_admits_arima.csv
data/CA/covid_admits_damped_holts.csv
data/CA/covid_admits_holts.csv
data/CA/epi_forecast.csv
data/CA/forecasts/covid_admits_NNETAR.rds
data/CA/forecasts/covid_admits_arima.rds
data/CA/forecasts/covid_admits_damped_holts.rds
data/CA/forecasts/covid_admits_holts.rds
data/CA/icl_model.csv
data/CA/icl_rt.csv
data/CA/ihme.csv
data/CA/mit.csv
data/CA/mobs.csv
data/CA/nowcasts/cislaghi.rds
data/CA/nowcasts/covidestim.rds
data/CA/nowcasts/jrc.rds
data/CA/rand_scenarios.csv
data/CA/reich_data.csv
data/CA/rt_live.csv
data/CA/ucla_state.csv
data/CA/ygg.csv
data/CA/ygg_county.csv
data/CA/yugroup.csv
data/GA/can_full_reff_table.csv
data/GA/can_state_reff_table.csv
data/GA/can_strong_scenario.csv
data/GA/can_weak_scenario.csv
data/GA/epi_forecast.csv
data/GA/icl_model.csv
data/GA/icl_rt.csv
data/GA/ihme.csv
data/GA/mit.csv
data/GA/mobs.csv
data/GA/rand_scenarios.csv
data/GA/reich_data.csv
data/GA/rt_live.csv
data/GA/ucla_state.csv
data/GA/ygg.csv
data/GA/ygg_county.csv
data/GA/yugroup.csv
data/WA/covid_actuals.csv
data/WA/forecasts/covid_admits_NNETAR.rds
data/WA/forecasts/covid_admits_arima.rds
data/WA/forecasts/covid_admits_damped_holts.rds
data/WA/forecasts/covid_admits_holts.rds
data/WA/nowcasts/cislaghi.rds
data/WA/nowcasts/covidestim.rds
data/WA/nowcasts/jrc.rds
data/params/onsetToHospParameters_latest.Rdata
g-analytics.js
global.R
renv.lock
saved_old_versions/mobs_California_data.json
saved_old_versions/mobs_Georgia_data.json
saved_old_versions/mobs_Michigan_data.json
saved_old_versions/mobs_New York_data.json
saved_old_versions/mobs_Oregon_data.json
server.R
ui.R
www/calcat_ga_screen.png
www/calcat_logo.gif
www/calcat_logo_2.png
www/calcat_logo_wide.gif
www/calcat_long.png
www/dygraph_custom.css
www/forecast_icon.jpg
www/nowcast_icon.jpg
www/reff_cuml_infection.jpg
www/reff_cuml_infectionOld.png
www/scenario_icon.jpg
