Man pages for Stefanos-Apostle/NixSEA-package
| cust_sets | function to make NixSEA sets object from gene sets not in... |
| enrichment_analysis | Plots enrichment of significant gene sets |
| enrichment_figures | Creates a plot of significant gene sets and a heatmap of... |
| entrez_correct | Corrects duplicate entrex ids |
| geneid_correct | Corrects duplicate gene ids |
| geneset_dist | Gene set distribution plot function |
| geneset_list | Creates a list of genesets from the S4 class object of... |
| keyword_ann | Annotation of keywords in significantly enriched gene sets |
| keyword_geneset | Creates S4 class object with slots containing msigdb gene... |
| LE_heatmap | Plots a heatmap of the Leading Edge genes from the... |
| load_gmt | Function to load in tab delim gene sets from .gmt formatted... |
| make_entrez | function to convert mgi_symbol gene sets to entrez for GSEA |
| mgi_dup_fix | function to average mgi symbol duplicates |
| msigdb_sets | Used to inialize S4 class object for storing msigdb info |
| RNK_make | Creates a rank file for GSEA from DESeq2 results |
| top_genesets | Visualization of top gene sets enriched in each condition |
