Sun-lab/SMASH: Subclone Multiplicity Allocation and Somatic Heterogeneity

Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).

Getting started

Package details

Maintainer
LicenseGPL (>= 3)
Version1.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Sun-lab/SMASH")
Sun-lab/SMASH documentation built on March 5, 2025, 8 p.m.