Files in TESA-workshops/TESAsamSim

Closed-loop salmon simulator for 2021 TESA workshop

R/RcppExports.R R/TESAsamSim.R R/arrayMeans.R R/buildDataframe.R R/calcBenchmarks.R R/calcObsCatch.R R/calcObservedError.R R/calcQuantile.R R/calcRealCatch.R R/calcSynchMetrics.R R/calcTAC.R R/calcTAC_fixedER.R R/cv.R R/estimateTau.R R/exampleData_fraserRecAgePpns.R R/exampleData_fraserRecMatrix.R R/exampleData_fraserSR.R R/exampleData_harvestControlRule.R R/exampleData_plottingDF.R R/exampleData_synchList.R R/extinctionCheck.R R/generateCycle.R R/generateOutputList.R R/generationMean.R R/genericRecoverySimulator.R R/getResiduals.R R/getSRPars.R R/infillMatrices.R R/mutateWhen.R R/plotDiagnostics.R R/plotDots.R R/plotRadar.R R/plotTradeoffs.R R/ppnErr.R R/quickLM.R R/recoverySimulator.R R/sleekTheme.R R/stockRecruitModels.R R/tacConstraint.R R/ungroupRowwise.R R/utils-pipe.R R/wtdCV.R README.md Rmd/TESASimRun-and-DLM-breakoutPlots.Rmd Rmd/exampleTESASimRun-and-DLM-newPlots.Rmd Rmd/exampleTESASimRun-and-DLM.Rmd Rmd/exampleTESASimRun.Rmd dlm-wrapper.R man/TESAsamSim.Rd man/agPlottingDF.Rd man/agPlottingDF2.Rd man/arrayMean.Rd man/buildDataAgg.Rd man/buildDataCU.Rd man/calcErr.Rd man/calcObsCatch.Rd man/calcRealCatch.Rd man/calcSynchMetrics.Rd man/calcTAC.Rd man/calcTAC_fixedER.Rd man/checkInteger.Rd man/constrain.Rd man/coordRadar.Rd man/cuPlottingDF.Rd man/cuPlottingDF2.Rd man/cv.Rd man/dot-onUnload.Rd man/exampleHCRList.Rd man/extinctionCheck.Rd man/fastLm.Rd man/genCycle.Rd man/genMean.Rd man/genOutputList.Rd man/genericRecoverySim.Rd man/geoMean.Rd man/getResiduals.Rd man/getSRPars.Rd man/getTau.Rd man/infill.Rd man/larkinModel.Rd man/larkinParameters.Rd man/mutate_when.Rd man/mvLogisticLogProp.Rd man/pipe.Rd man/plotAgDot.Rd man/plotAgTradeoff.Rd man/plotCUDot.Rd man/plotCUTradeoff.Rd man/plotDiagCU.Rd man/plotRadar.Rd man/ppnAgeErr.Rd man/ppnCatchErr.Rd man/qHigh.Rd man/qLow.Rd man/quickLm.Rd man/recMatrix.Rd man/recPpns.Rd man/recoverySim.Rd man/rickerModel.Rd man/rickerParameters.Rd man/rickerSurvModel.Rd man/sGenOptimum.Rd man/sGenSolver.Rd man/synchList.Rd man/theme_sleekX.Rd man/ungroupRowwiseDF.Rd man/wtdCV.Rd plotOutputs_newfuncs.R runTESAsamSim.R