Man pages for TESA-workshops/TESAsamSim
Closed-loop salmon simulator for 2021 TESA workshop
| agPlottingDF | Example datafarme of aggregate abundances |
| agPlottingDF2 | Example aggregate plotting data |
| arrayMean | Truncated normal distribution |
| buildDataAgg | Build output dataframes for aggregate data |
| buildDataCU | Build output dataframes for CU data |
| calcErr | Calculate observed error |
| calcObsCatch | Calculate observed catch |
| calcRealCatch | Calculate realized catches |
| calcSynchMetrics | Calculate synchrony metrics |
| calcTAC | Calculate total allowable catch |
| calcTAC_fixedER | Title |
| checkInteger | Check integer |
| constrain | Constrain mixed-stock harvest |
| coordRadar | Get radar coordinates |
| cuPlottingDF | Example CU-specific plotting data |
| cuPlottingDF2 | Example CU-specific plotting data |
| cv | cv |
| dot-onUnload | Unload DLL |
| exampleHCRList | Example data for harvest control rule functions |
| extinctionCheck | Extinction check |
| fastLm | Estimate coefficients for linear model. |
| genCycle | Generate cycle lines |
| genericRecoverySim | Recovery Simulator - Generic Version |
| genMean | Generational mean |
| genOutputList | Generate list of outputs |
| geoMean | Calculate geometric mean |
| getResiduals | Gather stock-recruit residuals |
| getSRPars | Summarize stock-recruit parameters |
| getTau | Estimate tau |
| infill | Infill spawner/recruit abundance |
| larkinModel | Generate recruit abundance with Larkin model |
| larkinParameters | Posterior estimates of Ricker stock recruit parameters |
| mutate_when | mutate_when |
| mvLogisticLogProp | Calculate multivariate logistric proportions |
| pipe | Pipe operator |
| plotAgDot | Aggregate dot plot |
| plotAgTradeoff | Aggregate trade off plot |
| plotCUDot | CU-specific dot plot |
| plotCUTradeoff | CU-specific trade off plot |
| plotDiagCU | Diagnostic plot |
| plotRadar | Radar plot |
| ppnAgeErr | Generate log-normal error associated with proportions data |
| ppnCatchErr | Generate log-normal error associated with catch data |
| qHigh | Calculate upper quantile |
| qLow | Calculate lower quantile |
| quickLm | Linear model |
| recMatrix | Fraser River recruitment matrix |
| recoverySim | Recovery simulator |
| recPpns | Proportion of recruits at age for Fraser River sockeye |
| rickerModel | Generate recruit abundance with Ricker model |
| rickerParameters | Posterior estimates of Ricker stock recruit parameters |
| rickerSurvModel | Generate recruit abundance with the Ricker Model with a... |
| sGenOptimum | Optimize sGen |
| sGenSolver | Solve for sGen |
| synchList | Simulated time series list |
| TESAsamSim | TESAsamSim |
| theme_sleekX | Minimalist ggplot theme |
| ungroupRowwiseDF | ungroupRowwiseDF |
| wtdCV | Calculate weighted component CV |
