Files in TESTgroup-BNL/PLSR_for_plant_trait_prediction

A simple add-on package to aid in the fitting of leaf or canopy scale spectra-trait PLSR models

R/create_data_split.R R/f.coef.valid.R R/f.plot.coef.R R/f.plot.spec.R R/find_optimal_components.R R/get_ecosis_data.R R/pls_permutation.R R/plsr_data.R R/utils.R R/vip.R README.md data-raw/plsr_data.R inst/doc/ely_etal_ex1.pdf inst/doc/ely_etal_ex2.pdf inst/doc/kit_sla_ex3.pdf inst/doc/neon_canopy_leafN_ex5.pdf inst/doc/neon_canopy_lma_ex10.pdf inst/doc/neon_lma_ex4.pdf inst/doc/reseco_leafN_ex6.pdf inst/doc/reseco_leafN_ex7.pdf inst/doc/reseco_lma_ex8.pdf inst/doc/sserbin2019_plsr_ex9.pdf inst/scripts/apply_sserbin2014_leafN_plsr_to_ext_data_example.R inst/scripts/apply_sserbin2019_lma_plsr_to_ely_example.R inst/scripts/apply_sserbin2019_lma_plsr_to_neon_example.R inst/scripts/install_dependencies.R inst/scripts/pull_data_from_ecosis.R inst/scripts/simple_spectra-trait_plsr_example.R inst/scripts/spectra-trait_ely_leafN_plsr_bootstrap_example.R inst/scripts/spectra-trait_ely_leafN_plsr_bootstrap_grp_example.R inst/scripts/spectra-trait_kit_sla_plsr_example.R inst/scripts/spectra-trait_nasafft_leafN_plsr_bootstrap_example.R inst/scripts/spectra-trait_neon_leafN_canopy_plsr_example.R inst/scripts/spectra-trait_neon_lma_plsr_example.R inst/scripts/spectra-trait_reseco_leafN_plsr_bootstrap_example.R inst/scripts/spectra-trait_reseco_leafN_plsr_example.R inst/scripts/spectra-trait_reseco_lma_plsr_example.R man/VIP.Rd man/VIPjh.Rd man/create_data_split.Rd man/ely_plsr_data.Rd man/f.coef.valid.Rd man/f.plot.coef.Rd man/f.plot.spec.Rd man/find_optimal_comp_by_groups.Rd man/find_optimal_components.Rd man/get_ecosis_data.Rd man/grapes-notin-grapes.Rd man/percent_rmse.Rd man/pls_permutation.Rd man/pls_permutation_by_groups.Rd man/source_GitHubData.Rd man/testForPackage.Rd spectratrait_1.2.5.pdf tests/testthat.R tests/testthat/test.create_data_split.R tests/testthat/test.get_ecosis_data.R tests/testthat/test.optimal_components.R tests/testthat/test.simple_plsr.R vignettes/ely_etal_ex1.Rmd vignettes/ely_etal_ex1.md vignettes/ely_etal_ex1.pdf vignettes/ely_etal_ex2.Rmd vignettes/ely_etal_ex2.md vignettes/ely_etal_ex2.pdf vignettes/kit_sla_ex3.Rmd vignettes/kit_sla_ex3.md vignettes/kit_sla_ex3.pdf vignettes/neon_canopy_leafN_ex5.Rmd vignettes/neon_canopy_leafN_ex5.md vignettes/neon_canopy_leafN_ex5.pdf vignettes/neon_canopy_lma_ex10.Rmd vignettes/neon_canopy_lma_ex10.md vignettes/neon_canopy_lma_ex10.pdf vignettes/neon_lma_ex4.Rmd vignettes/neon_lma_ex4.md vignettes/neon_lma_ex4.pdf vignettes/reseco_leafN_ex6.Rmd vignettes/reseco_leafN_ex6.md vignettes/reseco_leafN_ex6.pdf vignettes/reseco_leafN_ex7.Rmd vignettes/reseco_leafN_ex7.md vignettes/reseco_leafN_ex7.pdf vignettes/reseco_lma_ex8.Rmd vignettes/reseco_lma_ex8.md vignettes/reseco_lma_ex8.pdf vignettes/sserbin2019_plsr_ex9.Rmd vignettes/sserbin2019_plsr_ex9.md vignettes/sserbin2019_plsr_ex9.pdf