Files in THERMOSTATS/RVA
RNAseq Visualization Automation
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/plot_cutoff.R
R/plot_gene.R
R/plot_heatmap.R
R/plot_pathway.R
R/plot_qq.R
R/plot_volcano.R
R/validate.input.R
README.md
RVA.Rproj
RVA_files/figure-html/unnamed-chunk-10-1.png
RVA_files/figure-html/unnamed-chunk-16-1.png
RVA_files/figure-html/unnamed-chunk-19-1.png
RVA_files/figure-html/unnamed-chunk-22-1.png
RVA_files/figure-html/unnamed-chunk-26-1.png
RVA_files/figure-html/unnamed-chunk-27-1.png
RVA_files/figure-html/unnamed-chunk-31-1.png
RVA_files/figure-html/unnamed-chunk-32-1.png
RVA_files/figure-html/unnamed-chunk-33-1.png
RVA_files/figure-html/unnamed-chunk-42-1.png
RVA_files/figure-html/unnamed-chunk-43-1.png
RVA_files/figure-html/unnamed-chunk-44-1.png
RVA_files/figure-html/unnamed-chunk-51-1.png
RVA_files/figure-html/unnamed-chunk-52-1.png
RVA_files/figure-html/unnamed-chunk-55-1.png
RVA_files/figure-html/unnamed-chunk-61-1.png
RVA_files/figure-html/unnamed-chunk-63-1.png
RVA_files/figure-html/unnamed-chunk-66-1.png
RVA_files/figure-html/unnamed-chunk-68-1.png
RVA_files/figure-html/unnamed-chunk-77-1.png
RVA_files/figure-html/unnamed-chunk-79-1.png
data/.DS_Store
data/Sample_disease_gene_set.rda
data/Sample_summary_statistics_table.rda
data/Sample_summary_statistics_table1.rda
data/c2BroadSets.rda
data/count_table.rda
data/sample_annotation.rda
data/sample_count_cpm.rda
data/wpA2020.rda
man/Sample_disease_gene_set.Rd
man/Sample_summary_statistics_table.Rd
man/Sample_summary_statistics_table1.Rd
man/c2BroadSets.Rd
man/cal.pathway.scores.Rd
man/calc.cfb.Rd
man/count_table.Rd
man/dlPathwaysDB.Rd
man/get.cpm.colors.Rd
man/get.cutoff.df.Rd
man/get.cutoff.ggplot.Rd
man/make.cutoff.plotly.Rd
man/multiPlot.Rd
man/nullreturn.Rd
man/plot_cutoff.Rd
man/plot_cutoff_single.Rd
man/plot_gene.Rd
man/plot_heatmap.cfb.Rd
man/plot_heatmap.cpm.Rd
man/plot_heatmap.expr.Rd
man/plot_pathway.Rd
man/plot_qq.Rd
man/plot_volcano.Rd
man/prettyGraphs.Rd
man/produce.cutoff.message.Rd
man/produce.cutoff.warning.Rd
man/reformat.ensembl.Rd
man/sample_annotation.Rd
man/sample_count_cpm.Rd
man/secondCutoffErr.Rd
man/transform.geneid.Rd
man/validate.FC.Rd
man/validate.annot.Rd
man/validate.baseline.Rd
man/validate.col.types.Rd
man/validate.comp.names.Rd
man/validate.data.Rd
man/validate.data.annot.Rd
man/validate.flag.Rd
man/validate.genes.present.Rd
man/validate.geneset.Rd
man/validate.numeric.Rd
man/validate.pathways.db.Rd
man/validate.pval.range.Rd
man/validate.pvalflag.Rd
man/validate.pvals.Rd
man/validate.single.table.isnotlist.Rd
man/validate.stats.Rd
man/validate.stats.cols.Rd
man/wpA2020.Rd
paper/Rplot1.png
paper/Rplot2.png
paper/Rplot3.png
paper/Rplot4.png
paper/Rplot5.png
paper/Rplot6.png
paper/paper.bib
paper/paper.html
paper/paper.md
vignettes/.gitignore
vignettes/RVA.Rmd
