Man pages for TJGorrie/localXCR
Shiny GUI to annotate Fragalysis/XChem Experiments
| controlPanelModal | Generate Control Panel Modal |
| createExperiment | Create experiment class object |
| createFragUploadFolder | Create the folder one would need to upload to fragalysis |
| Experiment | Experiment Class |
| flex_ui | Flexible UI sidebar panel for XCR |
| fragview_ui | Create the UI components for FragView |
| getCurrentParams | Get current values from shiny input object |
| getExt | Get the file extension of a string (if any). |
| getLigandProp | Get a specific property from a list of ligands |
| get_residues | Get residue list from pdb_file |
| launch_pad_ui | Create LaunchPad UI for XCR |
| launch_XCR | Launch local XCR instance |
| Ligand | Ligand Class |
| loadDefaultParams | Get XCR specific defaults |
| n_anno | Number of ligands annotated |
| n_ligs | Number of ligands |
| normalise_path | Normalise shinyFiles path |
| n_revi | Number of ligands reviewed |
| pathOrNA | Return a valid filepath or a NA Value |
| remapData | Create reactive environment - from reactive values |
| remapFragviewData | Create another reactive environment - from reactive values |
| removeNamedComponent | Remove component from NGL stage |
| removeSpaces | Escape spaces in a string |
| resetForm | Reset the review form |
| review_ui | Generate Review UI components |
| rsplit | Split a starting from the right |
| saveReview | Save review of ligand to filesystem |
| server | XCR Server |
| strorNA | Return a str or NA |
| summary_ui | UI generator for first page |
| tcl | Convert a logical value into lower case characters for... |
| ui | UI generator |
| updateDensityBoxSize | Update the boxsize level of a map |
| updateDensityISO | Update the ISO level of a map |
| updateMainTable | Create a DT Render from a reactive data object |
| updateParam | Update NGL stage using updateaparam |
| updateVisability | Toggle the visability of a map |
| uploadApoPDB | Upload an apo PDB to NGL Stage |
| uploadMF2 | Upload a mol file and do something different to NGL Stage |
| uploadMolAndFocus | Upload a mol file to NGL Stage (and focus!) |
| uploadMolAndFocus2 | Upload a mol file and do something different to NGL Stage |
| uploadPDB | Upload a PDB to NGL Stage |
| uploadUnfocussedMol | Upload a mol file and not focus to NGL Stage |
| uploadVolumeDensity | Upload a mol file and do something different to NGL Stage |
