Man pages for TheoMichelot/hmmTMB
Fit Hidden Markov Models using Template Model Builder
| as_character_formula | Read formula with as.character without splitting |
| as_sparse | Transforms matrix to dgTMatrix |
| bdiag_check | Create block diagonal matrix (safe version) |
| cov_grid | Grid of covariates |
| Dist | R6 class for probability distribution |
| find_re | Find s(, bs = "re") terms in formula |
| gdeterminant | Generalized matrix determinant |
| HMM | R6 class for hidden Markov model |
| hmmTMB_cols | hmmTMB colour palette |
| hmmTMB-package | hmmTMB: Fit Hidden Markov Models using Template Model Builder |
| invmlogit | Multivarite inverse logit function |
| is_whole_number | Check if number of whole number |
| logLik.HMM | logLik function for SDE objects |
| logsumexp | Log of sum of exponentials |
| make_formulas | Process formulas and store in nested list |
| make_matrices | Create model matrices |
| MarkovChain | R6 class for HMM hidden process model |
| mlogit | Multivariate logit function |
| mvnorm_invlink | Multivariate Normal inverse link function |
| mvnorm_link | Multivariate Normal link function |
| na_fill | Fill in NAs |
| Observation | R6 class for HMM observation model |
| prec_to_cov | Get covariance matrix from precision matrix |
| quad_pos_solve | Solve for positive root of quadratic ax^2 + bx + c = 0 when... |
| strip_comments | Strip comments marked with a hash from a character vector |
| update.HMM | Update a model to a new model by changing one formula |
