Man pages for USCbiostats/BinaryDosage
Creates, Merges, and Reads Binary Dosage Files
| bdapply | Apply a function to each SNP in a binary dosage file |
| bdmerge | Merge binary dosage files together |
| genapply | Apply a function to each SNP in a gen, impute2, file |
| gentobd | Convert a gen file to a binary dosage file |
| getaaf | Calculate alternate allele frequency |
| getbdinfo | Get information about a binary dosage file |
| getgeninfo | Get information about a gen, impute2, file |
| getmaf | Calculate minor allele frequency |
| getrsq | Calculate imputation r squared |
| getsnp | Read SNP data from a binary dosage file |
| GetVCFInfo | Get information about a vcf file |
| vcfapply | Apply a function to each SNP in a vcf file |
| vcftobd | Convert a VCF file to a binary dosage file |
