Man pages for USFWS/SppDistMonProj
Species Distribution Monitoring Project Data Workflow Tools
| analysis.report | Create an analysis report |
| annual.estimates | Create plots of annual estimates of species occurrence and... |
| annual.summaries | Create year-specific summary table and figures and LaTeX code... |
| annual.tables | Create model selection and parameter estimate tables and... |
| betas.plot | Plot estimates and CIs of linear model coefficients for... |
| calc.pao | Calculate estimated proportion of sites at which a species... |
| create.dir | Create a file directory for a new refuge I&M project |
| create.raster | Create spatial raster object containing simulated habitat... |
| create.site.data | Create year-specific site data for random sample of survey... |
| df2s123df | Transform 'occu.data' object to Survey123 format |
| extract.year | Extract year from data file name |
| get.betas | Extract estimates of model beta parameters |
| get.topmod | Extract 'unmarkedFitOccu' object for top ranked model |
| make.unmarkedData | Create formatted data object for analysis using 'unmarked'... |
| naive.occu | Calculate naive species occurrence for surveyed sites |
| one.step | Simulate, format, and save survey site and observation data |
| pao.plot | Plot annual estimated proportions of sites at which a species... |
| predvals.plot | Plot predicted values for probability of species occurrence... |
| process.data | Process raw occurrence and site-level data for analysis |
| qc.report | Create a quality control report |
| sim.occu.data | Simulate species occurrence and observation data |
| SppDistMonProj | SppDistMonProj: a package for learning data workflow concepts... |
| startover | Delete all raw and derived data and products |
| trial.plot | Plot and save images for class exercise using Survey123 |
