Man pages for Urban-Analytics/rampuaR
COVID Infection Model
| age_symp_risk | Function to calculate risk of an individual being symptomatic... |
| case_assign | Assigns COVID cases based on individual probabilities |
| closest_string | Matching LAD/County to Google Mobility Region |
| county_file_download | Downloading a crosswalk table of county and LAD codes |
| covid_prob | Calculating probabilities of becoming a COVID case |
| create_input | Formatting data for infection model |
| exp_cdf | Exponential distribution cdf, used to integrate intensity (0,... |
| format_gm | Format Google Mobility data |
| gam_cases | Devon PHE cases |
| gm_file_download | Downloading Google Mobility Data |
| gm_filter | Filtering out the Google Mobility for the LAD or county |
| infection_length | Assigns the infection length of new cases |
| infection_prob | Calculating probabilities of becoming a COVID case |
| lad_file_download | Downloading crosswalk table of MSOA and LAD codes |
| local_outbreak | increase probability of getting covid for people in local... |
| lockdown_multiplier | Converting the smoothed residential data into a multiplier... |
| logistic_map | Function to map susceptibility |
| mortality_risk | Calculating mortality rate based on age and health risks |
| msoa_lad_code_matcher | Matching the LAD level populations with their associated LAD... |
| msoas | High Risk MSOAS |
| normalizer | Changing the spread of values to be between two set values |
| rank_assign | Assign COVID cases by ranking individuals current risk |
| recalc_sympdays | Recalculates number of symptomatic and presymptomatic days... |
| removed | Removes cases |
| removed_age | Removes cases based on age |
| residential_smoother | Smoothing the Google Mobility Residential data - there are... |
| run_removal_recalc | Runs the pipeline for removing cases and stepping symptomatic... |
| sum_betas | Summing betas for use in COVID probability calculation |
| sympt_risk | Calculating risk of being symptomatic mortality rate based on... |
| vaccinate | Vaccinate individuals on a given day according to the... |
