API for VCCRI/SPAGI
SPAGI: Identification of active signalling pathways by integrating gene expression and protein interaction network
| Global functions | |
|---|---|
| KN.protein | Man page |
| ROR1.data | Man page |
| RP.protein | Man page |
| SPAGI | Man page |
| TF.protein | Man page |
| combine_mm_hs_ppi | Man page Source code |
| compute_mean | Man page Source code |
| display_pathway_ranking_metric | Man page Source code |
| format_matrix_data | Man page Source code |
| generate_pathway_path | Man page Source code |
| get_pathway_activity_score | Man page Source code |
| get_pathway_downstream_tf_number | Man page Source code |
| get_pathway_ranking_metric | Man page Source code |
| get_ppi_for_molecules | Man page Source code |
| housekeeping.gene | Man page |
| identify_active_pathway_path | Man page Source code |
| pathway.path | Man page |
| preprocess_querydata | Man page Source code |
| spagi | Man page |
| spagi-package | Man page |
