Man pages for VCCRI/SPAGI
SPAGI: Identification of active signalling pathways by integrating gene expression and protein interaction network
| combine_mm_hs_ppi | combine_mm_hs_ppi |
| compute_mean | compute_mean |
| display_pathway_ranking_metric | display_pathway_ranking_metric |
| format_matrix_data | format_matrix_data |
| generate_pathway_path | generate_pathway_path |
| get_pathway_activity_score | get_pathway_activity_score |
| get_pathway_downstream_tf_number | get_pathway_downstream_tf_number |
| get_pathway_ranking_metric | get_pathway_ranking_metric |
| get_ppi_for_molecules | get_ppi_for_molecules |
| housekeeping.gene | Housekeeping gene data |
| identify_active_pathway_path | identify_active_pathway_path |
| KN.protein | Kinase protein data |
| pathway.path | Pathway path data |
| preprocess_querydata | preprocess_querydata |
| ROR1.data | ROR1 data |
| RP.protein | Receptor protein data |
| spagi-package | SPAGI: Identification of active signalling pathways by... |
| TF.protein | Transcription factor protein data |
