Files in WenlanzZ/MKDim
Determine Signal Space Dimension
.Rbuildignore
.gitignore
DESCRIPTION
Hoff/simdata.r
Hoff/svd.r
NAMESPACE
R/check_dim_matrix.R
R/correct_eigenvalues.R
R/create_subspace.R
R/dimension-package.R
R/dimension.R
R/estimate_rank_double_posterior.R
R/estimate_rank_kmeans.R
R/estimate_rank_ladle.R
R/estimate_rank_posterior.R
R/hoff.R
R/legacyplot.R
R/lung.R
R/modified_k_means.R
R/mp.R
R/subspace.R
R/truncate.R
R/x_sim.R
README.md
data-raw/lung.R
data-raw/lung.txt
data-raw/subset_origin_ident.txt
data/est_var_1.rds
data/lung.rda
dimension.Rproj
inst/benchmark/bench.csv
inst/benchmark/bench.rds
inst/benchmark/bench_2_2_1.rds
inst/benchmark/bench_params.rds
inst/benchmark/bench_params_2_2_1.rds
inst/benchmark/bench_params_sigma.rds
inst/benchmark/bench_params_sigma_ladle.rds
inst/benchmark/bench_params_three_kmeans_june14.rds
inst/benchmark/bench_sigma.rds
inst/benchmark/bench_sigma_ladle.rds
inst/benchmark/bench_three_kmeans_june14.rds
man/.Rapp.history
man/KM.Rd
man/Null.Rd
man/check_changepoint_input.Rd
man/check_comp_input.Rd
man/check_dim_matrix.Rd
man/check_num_est_samples_input.Rd
man/correct_eigenvalues.Rd
man/create_subspace.Rd
man/dimension.Rd
man/dmp.Rd
man/estimate_rank_double_posterior.Rd
man/estimate_rank_kmeans.Rd
man/estimate_rank_ladle.Rd
man/estimate_rank_posterior.Rd
man/hoff.Rd
man/hoff_gibbs_UVD_fixedrank.Rd
man/hoff_gibbs_UVD_varrank.Rd
man/hoff_gibbs_sample.Rd
man/km_plot.Rd
man/lcr.Rd
man/legacyplot.Rd
man/ln2moment.Rd
man/lung.Rd
man/marcenko_pastur_par.Rd
man/plot.dimension.Rd
man/plot.subspace.Rd
man/pmp.Rd
man/print.dimension.Rd
man/print.subspace.Rd
man/qmp.Rd
man/rW.Rd
man/resample.Rd
man/rmp.Rd
man/roots_cubic.Rd
man/roots_quartic.Rd
man/ruv_A.Rd
man/rvmf.Rd
man/subspace.Rd
man/subspace.default.Rd
man/subspace.matrix.Rd
man/truncate.Rd
man/x_sim.Rd
src/dimension.so
src/svd.c
src/svd.o
test-dimension all.r
test_on_dimension.R
tests/testthat.R
tests/testthat/reference_data/Subspace1.rds
tests/testthat/reference_data/x_denoised1.rds
tests/testthat/reference_data/x_denoised2.rds
tests/testthat/reference_data/x_denoised3.rds
tests/testthat/reference_data/x_denoised4.rds
tests/testthat/test-check_dim_matrix.R
tests/testthat/test-dimension.R
tests/testthat/test-hoff.R
tests/testthat/test-legacyplot.R
tests/testthat/test-subspace.R
tests/testthat/test-truncate.R
vignettes/.gitignore
vignettes/cell_type.png
vignettes/dimension.Rmd
vignettes/dimension.html
vignettes/dimension_scRNA_Seq.Rmd
vignettes/legacy_plot.png
vignettes/paper_umap.pdf
vignettes/paper_umap.png
vignettes/rsconnect/documents/dimension.Rmd/rpubs.com/rpubs/Document.dcf
vignettes/rsconnect/documents/dimension.Rmd/rpubs.com/rpubs/Publish Document.dcf
vignettes/rsconnect/documents/dimension_scRNA_Seq.Rmd/rpubs.com/rpubs/Document.dcf
vignettes/rsconnect/documents/dimension_scRNA_Seq.Rmd/rpubs.com/rpubs/Publish Document.dcf
vignettes/umap.png
