Man pages for XiangZhangSC/rwave
What the Package Does (One Line, Title Case)
| add_fluorescence_deviation_injection | Add fluorescence deviation due to injection |
| add_mixing_wait_period | Add extra ticks corresponding to the mixing & wait period |
| add_ocr_deviation_injection | Add effects of injections on OCR |
| add_true_ocr | Add true OCR to every well in a plate |
| compare_apr | ATP production rate comparison between groups |
| compare_ocr | OCR comparison between groups |
| convert_glycoapr | Quantify glycoAPR |
| convert_mitoapr | Quantify mitoAPR |
| import_seahorse | Import Seahorse data |
| navigate_probe_position | Define probe position for every tick |
| qc_fluorescence_drift | Quality control of fluorescence drift |
| rwave | rwave: Seahorse Wave in R |
| seed_plate | Initialize the Seahorse XF output |
| seed_rawdata_table | Initialization of data table for recording raw data |
| shiny_seahorse | Shiny app for Seahorse |
| sim_drift_well | Simulate fluorescent drift in temperature control wells |
| sim_o2_plate | Simulate the O2 emission of a Seahorse assay plate |
| sim_o2_well | Simulate the true O2 emission of a single well |
| sim_ph_well | Simulate the true pH emission of a single well |
| sketch_bioenergetic_space | Visualization of the bioenergetic space |
| sketch_comparison_apr | Visualize APR comparisons between groups |
| sketch_comparison_ocr | Visualize OCR comparisons between groups |
| sketch_ecar | Line plots of ECAR |
| sketch_fluorescence_drift | Visualization of fluorescence drift constants |
| sketch_o2 | Visualize the raw O2 pressure data |
| sketch_ocr | Line plots of OCR |
| sketch_plate_layout | Visualize the experiment setup in a plate |
| sketch_seahorse_radar | Seahorse radar chart |
| summarize_apr | Quantify ATP production rate |
| summarize_assay | Summary of assay settings |
| summarize_fluorescence_drift | Summarize fluoresence drift |
| summarize_ocr | Representive OCR values in mito stress test |
| summarize_seahorse | Summarize Sehorse in few parameters |
| tag_well | Assign experiment group to a well |
