Man pages for Yuliaxis/kernInt
Kernel Integration of Microbiome Analysis Methods & Data
| Acc | Accuracy |
| classify | SVM classifier |
| clr | clr transform |
| clrLin | Compositional Linear kernel |
| clrRBF | Aitchison RBF kernel |
| CSSnorm | Cumulative Sum Scaling Normalization |
| F1 | F1 |
| fuseData | Fuse Data |
| growth | Growth data |
| hklust | Hierarchical clustering |
| JSK | This function returns the Jensen Shannon Kernel |
| kernPCA | kernel PCA |
| Kfun | Functional linear kernel |
| KInt | Kernel Matrix Integration |
| Linear | Linear kernel |
| lsq | Least Squares Coefficients |
| outliers | SVM outlier detection / one class SVM |
| pig | Pig samples |
| Prec | Precision |
| qJacc | Quantitative Jaccard |
| RBF | RBF kernel |
| RBFun | RBF kernel for functions |
| Rec | Recall |
| regress | SVM regression |
| smoker | Airway samples from smokers and nonsmokers |
| soil | 89 samples of soil microbiota (raw counts) |
