Man pages for aarmiller/delayDX
Tasks for findind and estimating diagnostic delays
| add_time_map_keys_delay | Generates outpatient and inpatient visit keys and stores them... |
| boot_change_point | Bootstrap Estimation of Changepoint and simulated miss visits |
| boot_change_point_large_DB | Bootstrap Estimation of Changepoint and simulated miss visits... |
| boot_compare_methods | Bootstrapped change_point comparisons |
| build_dx_indicators_delay | Gather all visit keys containing specific diagnosis codes... |
| build_dx_indicators_delay_large_DB | Gather all visit keys containing specific diagnosis codes... |
| build_final_time_map | Builds a time map containing visit specific information for a... |
| build_final_time_map_large_DB | Builds a time map containing visit specific information for a... |
| build_time_map_delay | Builds a time map for a specific database |
| build_time_map_keys_delay | Build inpatient and outpatient (also includes ED) key... |
| collect_table | Sets up a collection tibble for holding and distributing... |
| compare_cp_methods_bootstrap | Run multiple bootstrapped change_point comparisons (in... |
| compute_sim_trial_duration_table | Compute simulation trial duration table |
| compute_sim_trial_n_visit_table | Compute simulation trial visit table |
| count_prior_events_truven | Count prior visits assocatied with a given condition |
| find_change_point | Find the change point in count data. This is a... |
| find_cp_cusum | Identify changepoint using CUSUM method, and find expected... |
| find_cp_linreg | Find the change point in count data using linear regression... |
| find_cp_loss_fun | find_cp_loss_fun |
| find_cp_pettitt | Identify changepoint using pettitt method, and find expected... |
| gather_collapse_enrollment | Get collapsed enrollment data over multiple... |
| gather_enroll_data | Get enrollment data over multiple "enrollees" tables (in... |
| gather_proc_data | Return inpatient and outpatient core information for a... |
| gather_rx_data | Return information for a specific list of rx codes over... |
| get_collapse_enrollment | Get collapsed enrollment data from one specific multiple... |
| get_core_data_delay | Gather variables from core information for a specific table |
| get_enroll_data | Get enrollment data from one specific multiple "enrollees"... |
| gether_core_data_delay | Gather variables from core information over multiple core... |
| gether_dx_keys_delay | Gather all visit keys containing specific diagnosis codes |
| gether_dx_keys_delay_large_DB | Gather all visit keys containing specific diagnosis codes for... |
| gether_proc_data_inpatient | Return inpatient core information for a specific list of cpt... |
| gether_proc_data_outpatient | Return outpatient core information for a specific list of cpt... |
| gether_rx_data | Return rx information for a specific list of ndc codes |
| get_incidence_data | Prepare a time map for incidence modeling |
| MAE | Mean absolute error |
| MSE | Mean squared error |
| MSLE | Mean squared log error |
| pipe | Pipe operator |
| prep_sim_data | Prepare data for simulation |
| RMSE | Root mean squared error |
| RMSLE | Root mean squared log error |
| run_compare_method | Compare change point methods |
| run_cp_bootstrap | Run multiple bootstrapped change_point simulations (in... |
| run_cp_bootstrap_large_DB | Run multiple bootstrapped change_point simulations (in... |
| run_sim_miss_patients | Run multiple simulations of missed patients |
| run_sim_miss_patients_large_DB | Run multiple simulations of missed patients for large... |
| run_sim_miss_visits | Run multiple simulations of missed visits |
| run_sim_miss_visits_large_DB | Run multiple simulations of missed visits for large databases |
| set_change_point | set_change_point |
| set_cp_cubic | set_cp_cubic |
| set_cp_exp | set_cp_exp |
| set_cp_lm | set_cp_lm |
| set_cp_poly | set_cp_poly |
| set_cp_quad | set_cp_quad |
| sim_miss_patients | Simulated missed patients from an estimated set of miss bins |
| sim_miss_patients_large_DB | Simulated missed patients from an estimated set of miss bins... |
| sim_miss_visits | Simulated miss visits from an estimated set of miss bins |
| sim_miss_visits_large_DB | Simulated miss visits from an estimated set of miss bins for... |
| time_map | Example time_map for running simulations |
