Files in aaronmberger/Geo_dGLMM_habitat
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

.gitattributes

.gitignore

DESCRIPTION

NAMESPACE

R/Build_TMB_Fn.R R/Calc_Anisotropic_Mesh.R R/Calc_Kmeans.R R/Calc_Polygon_Areas_and_Polygons_Fn.R R/Convert_LL_to_UTM_Fn.R R/Data_Fn.R R/Geostat_Sim.R R/Heatmap_Legend.R R/Make_Map.R R/MapDetails_Fn.R R/Param_Fn.R R/PlotAniso_Fn.R R/PlotCov_Fn.R R/PlotIndex_Fn.R R/PlotMap_Fn.R R/PlotResultsOnMap_Fn.r R/Plot_Ellipse_Fn.R R/Plot_Points_and_Bounds_Fn.R R/Plot_States_in_UTM_Fn.R R/Plot_data_and_knots.R R/Plot_range_quantiles.R R/Plot_range_shifts.R R/Prepare_BC_Coast_Extrapolation_Data_Fn.r R/Prepare_EBS_Extrapolation_Data_Fn.r R/Prepare_GOA_Extrapolation_Data_Fn.r R/Prepare_NWA_Extrapolation_Data_Fn.R R/Prepare_Other_Extrapolation_Data_Fn.R R/Prepare_SA_Extrapolation_Data_Fn.R R/Prepare_WCGBTS_Extrapolation_Data_Fn.R R/Print_Message.R R/QQ_Fn.R R/Timeseries_Fn.R R/Vessel_Fn.R R/match_strata_fn.R README.md

data/BC_pacific_cod_example.rda

data/EBS_pollock_data.rda

data/GOA_pacific_cod.rda

data/GOA_walleye_pollock.rda

data/WCGBTS_Canary_example.rda

data/bc_coast_grid.rda

data/california_current_grid.rda

data/eastern_bering_sea_grid.rda

data/georges_bank_haddock_fall.rda

data/georges_bank_haddock_spring.rda

data/gulf_of_alaska_grid.rda

data/iceland_cod.rda

data/northwest_atlantic_grid.rda

data/south_africa_grid.rda

data/south_africa_westcoast_jacopever.rda

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/BC_pacific_cod_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Aniso.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Dens.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Dens_Legend.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Pos.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Pos_Legend.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Pres.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Field_Pres_Legend.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Index.png

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Kmeans-100.RData

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Opt.txt

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Posterior_Predictive-Histogram.jpg

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Posterior_Predictive.jpg

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Q-Q_hist.jpg

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Q-Q_plot.jpg

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Record.txt

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Save.RData

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Sdreport.txt

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/Table_for_SS3.csv

examples/EBS_pollock_obsmodel=2_nx=100_v3k_biascorr=TRUE/center_of_gravity.png

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/EBS_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/Example--simple.R examples/Exploratory_scripts/notes_for_SPDE.R

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/GB_fall_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/GB_spring_haddock_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/GOA_Pcod_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/GOA_pollock_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Aniso.png

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens.png

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Field_Dens_Legend.png

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Index.png

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Kmeans-250.RData

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Opt.txt

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Q-Q_plot.jpg

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Record.txt

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Save.RData

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/Sdreport.txt

examples/SAWC_jacopever_obsmodel=2_nx=250_v3i_biascorr=TRUE/geo_index_v3i.cpp

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Aniso.png

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Field_Dens.png

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Field_Dens_Legend.png

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Index.png

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Kmeans-250.RData

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Opt.txt

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Q-Q_plot.jpg

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Record.txt

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Save.RData

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/Sdreport.txt

examples/WCGBTS_canary_obsmodel=2_nx=250_v3k_biascorr=TRUE_Include=VesselYear/center_of_gravity.png

examples/archive of data inputs for creation of grid files/GOAgrid2nmx2nm.dbf

examples/archive of data inputs for creation of grid files/NWAgrid2nmx2nm.txt

examples/archive of data inputs for creation of grid files/ebsgrid2nmx2nm.dbf

examples/archive of data inputs for creation of grid files/ebsgrid2nmx2nm_grid.pdf

examples/archive of data inputs for creation of grid files/ebsgrid2nmx2nm_metadata.txt

examples/archive of data inputs for creation of grid files/strataForOutput.zip

inst/executables/geo_index_v2i.cpp

inst/executables/geo_index_v2j.cpp

inst/executables/geo_index_v3a.cpp

inst/executables/geo_index_v3b.cpp

inst/executables/geo_index_v3c.cpp

inst/executables/geo_index_v3d.cpp

inst/executables/geo_index_v3e.cpp

inst/executables/geo_index_v3f.cpp

inst/executables/geo_index_v3g.cpp

inst/executables/geo_index_v3g_parallel.cpp

inst/executables/geo_index_v3h.cpp

inst/executables/geo_index_v3i.cpp

inst/executables/geo_index_v3j.cpp

inst/executables/geo_index_v3k.cpp

inst/executables/geo_index_v3l.cpp

inst/executables/geo_index_v3m.cpp

man/Build_TMB_Fn.Rd man/Calc_Anisotropic_Mesh.Rd man/Calc_Kmeans.Rd man/Calc_Polygon_Areas_and_Polygons_Fn.Rd man/Convert_LL_to_UTM_Fn.Rd man/Data_Fn.Rd man/Geostat_Sim.Rd man/Heatmap_Legend.Rd man/Make_Map.Rd man/Param_Fn.Rd man/PlotAniso_Fn.Rd man/PlotCov_Fn.Rd man/PlotIndex_Fn.Rd man/PlotMap_Fn.Rd man/Prepare_WCGBTS_Extrapolation_Data_Fn.Rd man/QQ_Fn.Rd man/SpatialDeltaGLMM-package.Rd man/Timeseries_Fn.Rd man/Vessel_Fn.Rd

aaronmberger/Geo_dGLMM_habitat documentation built on May 10, 2019, 3:20 a.m.

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aaronmberger/Geo_dGLMM_habitat
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

Files in aaronmberger/Geo_dGLMM_habitat
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

R Package Documentation

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aaronmberger/Geo_dGLMM_habitat Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

Files in aaronmberger/Geo_dGLMM_habitat Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

R Package Documentation

Browse R Packages

We want your feedback!

aaronmberger/Geo_dGLMM_habitat
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).

Files in aaronmberger/Geo_dGLMM_habitat
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc).