Files in abelson-lab/ECSI

Espresso - Somatic Mutation Calling using Contextual Error Models

R/annotate_MAF.R R/annotate_variants.R R/call_all_variants.R R/call_variants.R R/correct_pvalues.R R/filter_MAPQ.R R/filter_model_input.R R/flag_alleles.R R/generate_all_models.R R/generate_model.R R/get_flagged_alleles.R R/intersect_VRanges.R R/load_as_VRanges.R R/load_bed.R R/load_recurrent_mutations.R R/sequence_context.R R/subtract_VRanges.R README.md man/annotate_MAF.Rd man/annotate_variants.Rd man/call_all_variants.Rd man/call_variants.Rd man/correct_pvalues.Rd man/filter_MAPQ.Rd man/filter_model_input.Rd man/flag_alleles.Rd man/generate_all_models.Rd man/generate_model.Rd man/get_flagged_alleles.Rd man/intersect_VRanges.Rd man/load_as_VRanges.Rd man/load_bed.Rd man/load_recurrent_mutations.Rd man/sequence_context.Rd man/subtract_VRanges.Rd vignettes/Espresso_vignette.Rmd vignettes/Espresso_workflow.Rmd