Man pages for acgerstein/diskImageR
A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
| addType | Add factor column |
| aggregateData | Averages photographs of the same type |
| calcMIC | Convert RAD to MIC based on built-in or provided parameters... |
| createDataframe | Dataframe creation |
| find.mle | Helper fuctions from diversitree package |
| IJMacro | Run an imageJ analysis macro on the folder that contains the... |
| IJMacro16 | Run an imageJ analysis macro on the folder that contains the... |
| imageJInterface-class | Creates a a thin wrapper reference class for imageJ... |
| maxLik | Maximum Likelihood Inference |
| oneParamPlot | Used to plot a single parameter |
| plotRaw | Used to plot the results of the imageJ analysis |
| readExistingDF | Read in an existing dataframe using the tcltk interface |
| readInExistingIJ | Used to read in existing imageJ analyses |
| saveMLParam | Save maximum likelihood output |
| threeParamPlot | Used to plot the RAD, slope and FoG parameter results |
| twoParamPlot | Used to plot the RAD and FoG results |
