| .filterProteinCoding |
Source code
|
| .filterSeqnames |
Source code
|
| .headtail |
Source code
|
| .matchGenesToIds |
Source code
|
| .resultsForAllContrasts |
Source code
|
| .unlistGenes |
Source code
|
| AcidGseaTestsUrl |
Man page
|
| FgseaList |
Man page
|
| FgseaList,DESeqAnalysis-method |
Man page
|
| FgseaList,DESeqResults-method |
Man page
|
| FgseaList,RankedList-method |
Man page
|
| FgseaList-class |
Man page
|
| GeneToSymbol |
Man page
|
| GeneToSymbol,FgseaList-method |
Man page
|
| RankedList |
Man page
|
| RankedList,DESeqAnalysis-method |
Man page
|
| RankedList,DESeqResults-method |
Man page
|
| RankedList,FgseaList-method |
Man page
|
| RankedList-class |
Man page
|
| alphaThreshold |
Man page
|
| alphaThreshold,FgseaList-method |
Man page
|
| alphaThreshold<- |
Man page
|
| alphaThreshold<-,FgseaList,numeric-method |
Man page
|
| collectionNames |
Man page
|
| collectionNames,FgseaList-method |
Man page
|
| collectionNames<- |
Man page
|
| collectionNames<-,FgseaList,character-method |
Man page
|
| combine |
Man page
|
| combine,FgseaList,FgseaList-method |
Man page
|
| contrastNames |
Man page
|
| contrastNames,FgseaList-method |
Man page
|
| contrastNames<- |
Man page
|
| contrastNames<-,FgseaList,character-method |
Man page
|
| convertToHuman |
Man page
|
| convertToHuman,DESeqAnalysis-method |
Man page
|
| enrichedGeneSets |
Man page
|
| enrichedGeneSets,FgseaList-method |
Man page
|
| export |
Man page
|
| export,FgseaList,character-method |
Man page
|
| fgsea |
Man page
|
| geneSet |
Man page
|
| geneSet,FgseaList-method |
Man page
|
| geneSetNames |
Man page
|
| geneSetNames,FgseaList-method |
Man page
|
| geneSetResults |
Man page
|
| geneSetResults,FgseaList-method |
Man page
|
| leadingEdge |
Man page
|
| leadingEdge,FgseaList-method |
Man page
|
| markdownTables |
Man page
|
| markdownTables,FgseaList-method |
Man page
|
| nesThreshold |
Man page
|
| nesThreshold,FgseaList-method |
Man page
|
| nesThreshold<- |
Man page
|
| nesThreshold<-,FgseaList,numeric-method |
Man page
|
| params |
Man page
|
| plotEnrichedGeneSets |
Man page
|
| plotEnrichedGeneSets,FgseaList-method |
Man page
|
| plotEnrichedUpset |
Man page
|
| plotEnrichedUpset,FgseaList-method |
Man page
|
| plotGeneSet |
Man page
|
| plotGeneSet,FgseaList-method |
Man page
|
| plotHeatmap |
Man page
|
| plotHeatmap,FgseaList-method |
Man page
|
| plotLfc |
Man page
|
| plotLfc,FgseaList-method |
Man page
|
| plotNes |
Man page
|
| plotNes,FgseaList-method |
Man page
|
| prepareGeneSetFiles |
Man page
Source code
|
| results |
Man page
|
| results,FgseaList-method |
Man page
|
| show |
Man page
|
| show,FgseaList-method |
Man page
|
| updateObject |
Man page
|
| updateObject,FgseaList-method |
Man page
|
