Files in acornamr/acorn-dashboard

A Dashboard for ACORN AMR Data

R/run_app.R README.md inst/acorn/app.R inst/acorn/www/R/data/01_read_data_dic.R inst/acorn/www/R/data/01_read_lab_codes.R inst/acorn/www/R/data/01_read_lab_data.R inst/acorn/www/R/data/01_read_redcap_f01f05.R inst/acorn/www/R/data/01_read_redcap_hai.R inst/acorn/www/R/data/02_process_redcap_f01f05.R inst/acorn/www/R/data/02_process_redcap_hai.R inst/acorn/www/R/data/03_map_variables.R inst/acorn/www/R/data/04_map_specimens.R inst/acorn/www/R/data/05_map_organisms.R inst/acorn/www/R/data/06_make_ast_group.R inst/acorn/www/R/data/07_ast_interpretation.R inst/acorn/www/R/data/08_ast_interpretation_nonstandard.R inst/acorn/www/R/data/09_generate_lab_log.R inst/acorn/www/R/data/10_checklist_lab.R inst/acorn/www/R/data/11_link_clinical_assembly.R inst/acorn/www/R/functions/custom_usei18n.R inst/acorn/www/R/functions/filter_data.R inst/acorn/www/R/functions/h4_title.R inst/acorn/www/R/functions/heuristic_time_unit.R inst/acorn/www/R/functions/highchart_sir.R inst/acorn/www/R/functions/highchart_sir_evolution.R inst/acorn/www/R/functions/icon.R inst/acorn/www/R/functions/notify.R inst/acorn/www/R/functions/on_acorn_load.R inst/acorn/www/R/functions/read_encrypted_cred.R inst/acorn/www/R/functions/text_checklist.R inst/acorn/www/R/functions/upset_antibiotics.R inst/acorn/www/R/functions/upset_co_resistance.R inst/acorn/www/R/functions/use_acorn_name.R inst/acorn/www/R/outputs/app_github_versions.R inst/acorn/www/R/outputs/checklist_status.R inst/acorn/www/R/outputs/header_nb_boxes.R inst/acorn/www/R/outputs/info_data.R inst/acorn/www/R/outputs/site_logo.R inst/acorn/www/R/outputs/tab_amr/amr_sir.R inst/acorn/www/R/outputs/tab_datamanagement/table_enrolment_log.R inst/acorn/www/R/outputs/tab_followup/bsi_summary.R inst/acorn/www/R/outputs/tab_followup/followup_clinical_outcome_status.R inst/acorn/www/R/outputs/tab_followup/followup_outcome_clinical_diag.R inst/acorn/www/R/outputs/tab_followup/followup_outcome_d28.R inst/acorn/www/R/outputs/tab_hai/hai_bed_occupancy_ward.R inst/acorn/www/R/outputs/tab_hai/hai_rate_ward.R inst/acorn/www/R/outputs/tab_microbiology/contaminants_gauge.R inst/acorn/www/R/outputs/tab_microbiology/contaminants_pct.R inst/acorn/www/R/outputs/tab_microbiology/culture_specgroup.R inst/acorn/www/R/outputs/tab_microbiology/culture_specimen_type.R inst/acorn/www/R/outputs/tab_microbiology/isolates_growth_gauge.R inst/acorn/www/R/outputs/tab_microbiology/isolates_growth_pct.R inst/acorn/www/R/outputs/tab_microbiology/isolates_organism.R inst/acorn/www/R/outputs/tab_microbiology/isolates_organism_table.R inst/acorn/www/R/outputs/tab_overview/blood_culture.R inst/acorn/www/R/outputs/tab_overview/date_enrollment.R inst/acorn/www/R/outputs/tab_overview/enrolment_blood_culture.R inst/acorn/www/R/outputs/tab_overview/profile_age.R inst/acorn/www/R/outputs/tab_overview/profile_antibiotics.R inst/acorn/www/R/outputs/tab_overview/profile_blood.R inst/acorn/www/R/outputs/tab_overview/profile_comorbidities.R inst/acorn/www/R/outputs/tab_overview/profile_diagnosis.R inst/acorn/www/R/outputs/tab_overview/profile_transfer_hospital.R inst/acorn/www/R/outputs/tab_overview/profile_type_ward.R inst/acorn/www/R/outputs/tab_overview/profile_ucci.R inst/acorn/www/R/outputs/tab_overview/table_patients.R inst/acorn/www/R/quick_access.R inst/acorn/www/R/reset_filters/reset_enrolment_input.R inst/acorn/www/R/reset_filters/reset_filter_age_cat.R inst/acorn/www/R/reset_filters/reset_filter_clinical_severity.R inst/acorn/www/R/reset_filters/reset_filter_date_enrolment.R inst/acorn/www/R/reset_filters/reset_filter_diagnosis_final.R inst/acorn/www/R/reset_filters/reset_filter_diagnosis_initial.R inst/acorn/www/R/reset_filters/reset_filter_enrolments.R inst/acorn/www/R/reset_filters/reset_filter_outcome.R inst/acorn/www/R/reset_filters/reset_filter_surveillance_cat.R inst/acorn/www/R/reset_filters/reset_filter_transfer.R inst/acorn/www/R/reset_filters/reset_filter_uCCI.R inst/acorn/www/R/reset_filters/reset_filter_ward_name.R inst/acorn/www/R/reset_filters/reset_filter_ward_type.R inst/acorn/www/R/update_input_widgets.R inst/acorn/www/markdown/about_acorn_en.md inst/acorn/www/markdown/about_acorn_fr.md inst/acorn/www/markdown/about_acorn_kh.md inst/acorn/www/markdown/about_acorn_vn.md inst/acorn/www/markdown/faq_acorn_en.md inst/acorn/www/markdown/faq_acorn_kh.md inst/acorn/www/markdown/faq_acorn_vn.md man/run_app.Rd misc/ACORN_statistics.Rmd misc/create_demo_acorn21.R misc/create_encrypted_credentials.R misc/explore_acorn_file.R misc/export_columns_for_data_dic.R misc/latest_acorn_file_per_site.R misc/test_10_link_clinical_assembly.R misc/test_fun_deduplication.R misc/test_sqlite_acorn/app.R misc/translations/translation_dashboard_1.R misc/translations/translation_dashboard_2.R renv/activate.R