API for adamd3/codondiffR
Codon usage comparisons across taxa
| Global functions | |
|---|---|
| .boxcox | Source code |
| .enrichTest | Source code |
| LDA | Man page |
| MCUFD | Man page |
| MCUFD_enrich | Man page |
| MCUFD_enrich,list-method | Man page |
| MCUFD_plot | Man page |
| MCUFD_plot,list-method | Man page |
| PCA | Man page |
| [,codonFreq,ANY,ANY,ANY-method | Man page |
| [[,codonFreq-method | Man page |
| biasPlot,codonFreq-method | Man page |
| bootstrap_LDA | Man page |
| codonFreq | Man page Man page |
| codonFreq-class | Man page |
| codonPlot | Man page |
| codonPlot,codonFreq-method | Man page |
| codondiffR | Man page |
| gcPlot,codonFreq-method | Man page |
| getFreqs | Man page |
| getFreqs,codonFreq-method | Man page |
| normalise | Man page Man page |
| nseq | Man page |
| nseq,codonFreq-method | Man page |
| predict_LDA | Man page |
| predict_LDA,codonFreq-method | Man page |
| predict_PCA | Man page |
| readSeq | Man page Source code |
| seqID | Man page |
| seqID,codonFreq-method | Man page |
| seqlen | Man page |
| seqlen,codonFreq-method | Man page |
| show,codonFreq-method | Man page |
