Files in adamd3/codondiffR
Codon usage comparisons across taxa
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/LDA.R
R/MCUFD.R
R/PCA.R
R/codondiffR.R
R/methods-codonFreq.R
R/sysdata.rda
README.md
codondiffR.Rproj
data-raw/codonUsageRefSeq.R
inst/extdata/example_viruses.fna
inst/figures/PCA-1.png
inst/figures/bias_plots-1.png
inst/figures/codon_plots-1.png
inst/figures/codon_plots-2.png
inst/figures/codon_plots_grouped-1.png
inst/figures/codon_plots_non_grouped-1.png
inst/figures/codondiffR.png
inst/figures/gc_plots-1.png
inst/figures/mcufd-1.png
inst/figures/mcufd-2.png
inst/figures/mcufd_enrich-1.png
inst/figures/mcufd_plot-1.png
man/LDA.Rd
man/MCUFD.Rd
man/MCUFD_enrich-list-method.Rd
man/PCA.Rd
man/codonFreq-class.Rd
man/codonFreq.Rd
man/codondiffR.Rd
man/extract-codonFreq.Rd
man/normalise.Rd
man/plot-codonFreq.Rd
man/plots.Rd
man/predict_PCA.Rd
man/readSeq.Rd
man/show-codonFreq.Rd
vignettes/.codondiffr.Rmd.swp
vignettes/.gitignore
vignettes/codondiffr.Rmd
