Man pages for adamd3/codondiffR
Codon usage comparisons across taxa

codondiffRcodondiffR: inter-taxon comparison of codon usage
codonFreqCreate new objects of class 'codonFreq'.
codonFreq-classS4 class for storing relative codon frequencies in...
extract-codonFreqMethods for subsetting a codonFreq object
LDADiscriminant analysis of codon usage by taxon
MCUFDCalculate mean codon usage similarity.
MCUFD_enrich-list-methodMCUFD enrichment testing
normaliseNormalise the codon frequencies in a codonFreq object by...
PCAPCA of codon usage by taxon
plot-codonFreqPlot the relative frequencies of codons in a 'codonFreq'...
plotsLDA plots
predict_PCAPCA plots
readSeqRead nucleotide sequences from a file.
show-codonFreqDisplay the data in a 'codonFreq' object.
adamd3/codondiffR documentation built on Sept. 3, 2022, 2:26 a.m.