Files in adamsardar/stoneTrees
Solve Node Centric Steiner Tree Problems
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/APSP.R
R/gene42_igraph.R
R/graphPresolveByCondensation.R
R/heinzWrapper.R
R/karateGraph.R
R/lymphomaGraph.R
R/nodeCentricSteinerForestProblem-class.R
R/nodeCentricSteinerTreeProblem-class.R
R/solverInteroperability.R
R/steinLibParser.R
R/stoneTrees-package.R
R/subOptimalNodeCentricSteinerTreeProblem-class.R
R/toCPXMatrix.R
R/validatingFunctions.R
README.md
codecov.yml
data/gene42_igraph.RData
data/karateGraph.RData
data/lymphomaGraph.RData
explore/APSPMethod.Rmd
explore/calculateAPSPmoduleMethod.R
explore/compareAllSolvers.R
explore/compareAllSolversMStT.R
explore/compareAllSolversProcessing.Rmd
explore/compareAllSolversSFReproducilbe.R
explore/compareGLPKandCBC.R
explore/compareReproducibleAllSolversProcessing.Rmd
explore/compareVersions.Rmd
explore/grid_arrange_shared_legend.R
explore/omprModels.Rmd
man/calculateAPSPmodule.Rd
man/condenseSearchGraph.Rd
man/findHeinzMStTP.Rd
man/findHeinzMWCS.Rd
man/gene42_igraph.Rd
man/karateGraph.Rd
man/lymphomaGraph.Rd
man/nodeCentricSteinerForestProblem.Rd
man/nodeCentricSteinerTreeProblem.Rd
man/parseSTPfile.Rd
man/readMStTPgraph.Rd
man/readMWCSgraph.Rd
man/stoneTrees.Rd
man/subOptimalSteinerProblem.Rd
man/toCPXMatrix.Rd
man/uncondenseGraph.Rd
man/writeMStTPfile_heinzFormat.Rd
tests/testthat.R
tests/testthat/test-APSP.R
tests/testthat/test-SteinLib_parser.R
tests/testthat/test-graphCondensation.R
tests/testthat/test-heinz_solver.R
tests/testthat/test-nodeCentricSteinerForestProblem.R
tests/testthat/test-nodeCentricSteinerTreeProblem.R
tests/testthat/test-solverInteroperability.R
tests/testthat/test-subOptimalSteinerProblem.R
tests/testthat/testData/ACTMOD/HCMV.stp
tests/testthat/testData/ACTMOD/drosophila001.stp
tests/testthat/testData/ACTMOD/drosophila005.stp
tests/testthat/testData/ACTMOD/drosophila0075.stp
tests/testthat/testData/ACTMOD/lymphoma.stp
tests/testthat/testData/ACTMOD/metabol_expr_mice_1.stp
tests/testthat/testData/ACTMOD/metabol_expr_mice_2.stp
tests/testthat/testData/ACTMOD/metabol_expr_mice_3.stp
tests/testthat/testData/GAM/25e814a792c4.stp
tests/testthat/testData/GAM/25e81700dead.stp
tests/testthat/testData/GAM/25e83661bc4.stp
tests/testthat/testData/GAM/25e83d7dbeea.stp
tests/testthat/testData/GAM/25e857e14393.stp
tests/testthat/testData/GAM/3a0d1335fe78.stp
tests/testthat/testData/GAM/3a0d151a8ee0.stp
tests/testthat/testData/GAM/3a0d17a83362.stp
tests/testthat/testData/GAM/3a0d1a1e31cf.stp
tests/testthat/testData/GAM/3a0d2255a681.stp
tests/testthat/testData/GAM/3a0d226a0a5c.stp
tests/testthat/testData/GAM/3a0d25c9a738.stp
tests/testthat/testData/GAM/3a0d25f9bda3.stp
tests/testthat/testData/GAM/3a0d2875c8cf.stp
tests/testthat/testData/GAM/3a0d325af5cc.stp
tests/testthat/testData/GAM/3a0d32b18854.stp
tests/testthat/testData/GAM/3a0d33d2aa32.stp
tests/testthat/testData/GAM/3a0d390c537e.stp
tests/testthat/testData/GAM/3a0d435ee480.stp
tests/testthat/testData/GAM/3a0d4427fe32.stp
tests/testthat/testData/GAM/3a0d4ccc9b37.stp
tests/testthat/testData/GAM/3a0d4dac5319.stp
tests/testthat/testData/GAM/3a0d52ee8185.stp
tests/testthat/testData/GAM/3a0d55ddd0a5.stp
tests/testthat/testData/GAM/3a0d568fbd87.stp
tests/testthat/testData/GAM/3a0d5dc4a759.stp
tests/testthat/testData/GAM/3a0d5e4aac27.stp
tests/testthat/testData/GAM/3a0d5e4aac27x.stp
tests/testthat/testData/GAM/3a0d610beb4c.stp
tests/testthat/testData/GAM/3a0d6505353b.stp
tests/testthat/testData/GAM/3a0d6a21bbd5.stp
tests/testthat/testData/GAM/3a0d6e97602a.stp
tests/testthat/testData/GAM/3a0d724ffec9.stp
tests/testthat/testData/GAM/3a0d73143aeb.stp
tests/testthat/testData/GAM/3a0dff0eb70.stp
tests/testthat/testData/GAM/48e7452da6ba.stp
tests/testthat/testData/GAM/48e7526364af.stp
tests/testthat/testData/GAM/48e76a6886bc.stp
tests/testthat/testData/GAM/795313fd138b.stp
tests/testthat/testData/GENE/gene42.stp
tests/testthat/testData/GENE/gene61a.stp
tests/testthat/testData/GENE/gene61b.stp
tests/testthat/testData/GENE/gene61c.stp
tests/testthat/testData/GENE/gene61f.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-0.6-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1000-a-1-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-0.6-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-1500-a-1-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-0.62-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-500-a-1-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-0.647-d-0.75-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.25-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.25-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.25-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.5-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.5-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.5-e-0.75.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.75-e-0.25.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.75-e-0.5.stp
tests/testthat/testData/JMPALMK/MWCS-I-D-n-750-a-1-d-0.75-e-0.75.stp
tests/testthat/testData/NAnamedNetword.RDS
tests/testthat/testData/README
