Files in aef1004/cytotypr
Pipeline to Identify Cell Types from Cytometry Data
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/calc_corr.R
R/check_flowjo.R
R/convert_factor_numeric.R
R/count_calc.R
R/data.R
R/fe.R
R/filter_FMO.R
R/filter_for_total_pheno.R
R/filter_pops.R
R/format_corr.R
R/get_99.R
R/heatmap_all_pheno.R
R/heatmap_subset_pheno.R
R/identified_pop_perc.R
R/plot_FMOs.R
R/plot_corr.R
R/tidy_flow_item.R
R/tidy_flow_set.R
README.Rmd
README.md
cytotypr.Rproj
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/CFU_data.xlsx
inst/extdata/FMOs/.DS_Store
inst/extdata/gating_strategy.csv
man/FMO_filtered_data.Rd
man/add_quantile
man/add_quantile.Rd
man/all_fe.Rd
man/calc_corr.Rd
man/check_flowjo.Rd
man/convert_factor_numeric.Rd
man/count_calc.Rd
man/df_FMO_gated_data.Rd
man/df_all_gated.Rd
man/df_all_gated_simple
man/fe.Rd
man/figures/README-fig.height-6-1.png
man/figures/README-fig.width-9-1.png
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-13-1.png
man/figures/README-unnamed-chunk-13-2.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/filter_FMO.Rd
man/filter_for_total_pheno.Rd
man/filter_pops.Rd
man/flowset_FMO_gated_data.Rd
man/flowset_gated_data.Rd
man/format_corr.Rd
man/get_99.Rd
man/heatmap_all_pheno.Rd
man/heatmap_subset_pheno.Rd
man/identified_pop_perc.Rd
man/plot_FMOs.Rd
man/plot_corr.Rd
man/sample_populations.Rd
man/sample_populations_all_groups.Rd
man/tidy_flow_item.Rd
man/tidy_flow_set.Rd
protocol/full_example.Rmd
protocol/full_example_for_word.Rmd
protocol/full_example_for_word.docx
protocol/protocol_flow_cytometry_cell_analysis.Rmd
protocol/protocol_flow_cytometry_cell_analysis.docx
protocol/protocol_flow_cytometry_cell_analysis.html
tests/testthat.R
tests/testthat/test-tidy_flow_item.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/creating_data_for_simple_example.Rmd
vignettes/example_with_complex_plotting.Rmd
vignettes/example_with_reading_in_data.Rmd
vignettes/simple_example.Rmd
