Man pages for aemon-j/LakeEnsemblR
Run Ensemble of Lake Models
| add_netcdf_output | Add output from model-specific model runs to netcdf file |
| analyse_ncdf | Analyse the output netCDF |
| analyse_strat | Returns stratification statstics |
| calc_fit | Calculate model performance metrics |
| calc_hmix | Estimate mixed-layer depth from temperature profiles |
| calc_stats | Calculate model fitness and stratification statistics |
| cali_ensemble | Calibrate models |
| change_pars | Change parameter or meteo scaling for a model |
| check_master_config | Check master config file |
| cost_model | Run a model and calculate model cost |
| create_netcdf_output | Create netcdf output from model-specific model runs |
| export_config | Export model configuration setups |
| export_dirs | Creates directories for each model |
| export_extinction | Export extinction coefficients |
| export_flow | Export LakeEnsemblR standardised flow files to model specific... |
| export_init_cond | Export initial conditions into each model setup from the... |
| export_location | Export location settings for each model |
| export_meteo | Export LakeEnsemblR standardized input to model specific... |
| export_model_parameters | Export model-specific parameters |
| export_output_settings | Export output settings for each model |
| export_time | Export time settings for each model |
| format_inflow | Format inflow data for each model |
| format_outflow | Format outflow data for each model |
| get_config_value | Extract value from any LER model config file |
| get_json_value | Extracts values from a json file |
| get_model_met_name | get the name of model meteo file |
| get_mylakeconfig_value | Extracts values from the MyLake config file |
| get_output | Get output data for each model |
| get_template | Copies LakeEnsemblR template from package to specified folder |
| get_yaml_multiple | Extract values from yaml file |
| input_config_value | Inputs value into any LER model config file |
| input_json | Input values into json file |
| input_mylakeconfig | Inputs value into the MyLake config file |
| input_yaml_multiple | Inputs values into yaml file |
| LHC_model | wrapper function for LHC calibration |
| load_LHC_results | Plot results of LHC calibration |
| load_var | Extract variables from NetCDF file |
| make_script | Creates a script to then run as a job |
| plot_ensemble | Function to plot results of the ensemble run |
| plot_heatmap | Plot heat map of ensemble model output |
| plot_LHC | Plot results of LHC calibration |
| plot_resid | Function to plot residuals for each model of the ensemble run |
| qual_fun | calculate model performance metrics |
| read_flake_out | Extract FLake output |
| run_ensemble | Run Ensemble of lake models |
| run_lint | Runs lint for LER script |
| scale_met | Format meteorological data for each model |
| time_average | Calculates the average of an irregular time series |
| wrap_model | warpper function for other two methods (modMCMC and modFit) |
