Man pages for aemon-j/gotmtools
Tools to work with GOTM input data and also process the output data
| calc_cc | Calculate cloud cover |
| calc_dens | Calculate water density from temperature |
| calc_in_lwr | Calculate incoming Long-wave radiation |
| calc_sp_hum | Calculate specific humidity |
| calc_swr | Calculate SWR using calculation within GOTM |
| conv_hypso | Convert hypsograph to rLakeAnalyzer format |
| Corner_text | Add text to the corner of a plot |
| dbsummary | Summarise ACPy database |
| diag_plots | Produces model diagnostic plots |
| extractDepths | Extract values at a depth or series of depths |
| get_1d | Extract 1-D variable from NetCDF file |
| get_flux | Extract fluxes from NetCDF file |
| get_param | Extract dataframe of all parameters from ACPy database |
| get_vari | Extract variables from NetCDF file |
| get_vari_z | Extract variables from NetCDF file for a certain depth |
| get_yaml_value | Extract values from yaml file |
| gotm_heatmap | Create heatmap from GOTM output |
| init_prof | Create initial profile for GOTM |
| input_nml | Input values into nml file |
| input_xml | Edit XML file |
| input_yaml | Input values into yaml file |
| key_dates | Locate stratification or ice on/off dates |
| list_vars | List variables within the NetCDF file |
| load_3d | Load 3d model variable |
| load_depths | Load layers file |
| load_input | Load inflow input files |
| load_obs | Load GOTMobservation file |
| long_heatmap | Create heatmap from dataerved files for acpy |
| long_lineplot | Create line plot from observed temperature in long format |
| match_tstep | Match the timestep of two dataframes |
| normDepths | Normalize depths of modelled output |
| NSE | Nash-Sutcliffe Efficiency |
| plot_calib | Plot results from the database |
| plot_ext | Plot light extinction parameters |
| plot_flux | Plot fluxes from NetCDF file |
| plot_hypso | Plot hypsograph data |
| plot_inp | Plot extra inputs |
| plot_mass_flux | Plot mass fluxes from NetCDF file |
| plot_meteo | Plot Meteo data |
| plot_month_prof | Plot monthly average profiles |
| plot_vari | Plot any variable from netcdf file |
| plot_wbal | Plot water balance from NetCDF file |
| plot_wtemp | Plot wtemp from netcdf file |
| readAcpyParams | Read ACPy configuration file and extract ranges |
| read_bestparam | Extract dataframe of best parameters from DB |
| rmse | Root Mean Square Error |
| scan_timeseries | Extract start and stop dates from a GOTM input file |
| setAcpyDb | Set ACPy database |
| setmodDepths | Extract modelled temperature at observation depths |
| setRange | Set parameter ranges for ACPy |
| setspinup | Set spin up year for ACPy |
| streams_switch | Switch on/off streams in gotm.yaml file |
| sum_stat | Caclulate summary stats of mod v obs |
| sum_stat_1var | Caclulate summary stats of one variable |
| ts_mld | Create a timeseries of mixed layer depth |
| ts_ss | Calculate Schimidt Stability timeseries |
| ts_stat | Calculate time-series over a depth dependent variable |
| ts_whole_laketemp | Calculate total lake temperature timeseries |
| view_init | View inital profile |
| view_nc | View NetCDF file |
| wide2long | Converts wide data to long data |
