Man pages for afmagee/ACDC
Congruent Rate Analyses in Birth-Death Scenarios
| congruent.models | Create a set of congruent models |
| crabs.loglikelihood | Compute likelihood |
| CRABS-package | CRABS: Congruent Rate Analyses in Birth-death Scenarios |
| create.model | Computes the congruent class, i.e., the pulled rates. |
| full.plot.regularity.thresholds | Plots the rate functions after filtering them according to a... |
| get.gmrf.global.scale | Global scale for GMRF using linear interpolation of... |
| get.hsmrf.global.scale | Global scale for HSMRF using linear interpolation of... |
| joint.congruent.models | Create a set of congruent models |
| model2df | model2df |
| plot.CRABS | Plots the rate functions including the pulled rates. |
| plot.CRABSset | Plots the rate functions |
| primates | Primates phylogenetic tree |
| primates_ebd | RevBayes Primates birth-death model |
| primates_ebd_log | Primates birth-death model |
| primates_ebd_tess | TESS Primates birth-death model |
| primates_ebd_treepar | TreePar Primates birth-death model |
| print.CRABS | Print method for CRABS object |
| print.CRABSposterior | Title |
| print.CRABSset | Print method for CRABSset object |
| print.CRABSsets | print.CRABSsets |
| read.RevBayes | read RevBayes log file |
| sample.basic.models | Samples simple increase/decrease models through time with... |
| sample.basic.models.joint | Jointly samples speciation and extinction trajectories... |
| sample.congruence.class | Stochastic exploration of congruent models. |
| sample.congruence.class.posterior | Stochastic exploration of congruent models for all samples in... |
| sample.rates | Sample custom functions through time. |
| summarize.posterior | Summarize trends in the posterior |
| summarize.trends | Summarize trends in the congruence class |
