Man pages for afsc-assessments/afscdata
An R Package for Extraction of AFSC Fishery Data
| accepted_model | copy the previous SSC accepted model as the new "base" model |
| afscdata-package | afscdata: An R Package for Extraction of AFSC Fishery Data |
| bsai_amak | raw data query for the BSAI Atka mackerel assessment |
| bsai_amak_catch_1977_1990 | BSAI Atka mackerel historical catch |
| bsai_atf | raw data query for BSAI arrowtooth flounder |
| bsai_fhs | raw data query for BSAI flathead sole |
| bsai_fhs_catch_1964_1994 | BSAI flathead sole historical catch data 1964-1994 |
| bsai_nrs | raw data query for BSAI northern rocksole |
| bsai_octopus | raw data query for BSAI octopus |
| bsai_orox | raw data query for BSAI other rockfish |
| catch_to_ss3 | Reformat Catch to SS3 structure currently only handles a... |
| collapse_filters | utility function for sql queries |
| connect | utility function to connect to server |
| disconnect | utility function to disconnect from server |
| fmp_key | Sablefish fmp area key by location |
| gap_check_bio | compare GAP updated survey biomass to (now) retired... |
| goa_amak | raw data query for the GOA Atka mackerel assessment |
| goa_atf | raw data query for GOA arrowtooth founder |
| goa_atf_catch_1961_1990 | GOA arrowtooth flounder historical catch data |
| goa_dusk | raw data query for GOA dusky rockfish |
| goa_dusk_catch_1977_1990 | GOA dusky rockfish historical catch data |
| goa_fhs | raw data query for GOA flathead sole |
| goa_fhs_catch_1978_1990 | GOA flathead sole historical catch |
| goa_nork | raw data query for GOA northern rockfish |
| goa_nork_catch_1961_1992 | GOA northern rockfish historical catch data |
| goa_octopus | raw data query for GOA octopus |
| goa_pcod_catch_1977_1990 | GOA Pacific cod historical catch |
| goa_pcod_larval_indices | GOA Pacific cod historical larval index data |
| goa_pop | raw data query for GOA POP |
| goa_pop_catch_1960_1990 | GOA POP historical catch data |
| goa_pop_fixed_fish_length_comp | GOA POP historical fishery length comp data |
| goa_rebs | raw data query for GOA rougheye/blackspotted rockfish |
| goa_rebs_catch_1977_2004 | GOA rougheye/blackspotted rockfish historical catch data |
| goa_shal_flats | raw data query for GOA shallow-water flatfish |
| goa_thornyhead | raw data query for GOA thorynhead rockfish |
| pipe | Pipe operator |
| q_bts_agecomp | query bottom trawl survey agecomps |
| q_bts_biomass | query bottom trawl survey biomass |
| q_bts_length | query bottom trawl survey length data from the AFSC server |
| q_bts_sizecomp | query bottom trawl survey sizecomps |
| q_bts_specimen | query bottom trawl survey specimen data from the AFSC server |
| q_catch | query fishery catch data from AKFIN server |
| q_catch_foreign | query foreign catch data from the AKFIN server |
| q_date | utility function for date of data query |
| q_fish_obs | fishery observer data query |
| q_fish_ticket | query fish ticket data |
| q_fsh_length | query fishery length data from the AKFIN server |
| q_fsh_specimen | query fishery specimen data from the AKFIN server |
| q_gap_biomass | query GAP products bottom trawl survey biomass note: pay... |
| q_lls_length | query nmfs longline survey raw length frequencies at the... |
| q_lls_rpn | query nfms longline survey relative population numbers or... |
| q_lls_rpn_length | query nfms longline survey rpn-weighted length frequencies |
| q_lls_sable_specimen | query nmfs longine survey specimen data (age, length, weight,... |
| q_nontarget | query non-target species catch estimate |
| q_psc | query prohibited species catch (psc) estimate |
| q_specs | Query specs |
| saa_pop_60 | GOA POP historical size at age parameters data |
| sabl_fixed_abundance | Sablefish historical abundance data |
| sabl_fixed_comps | Sablefish age and length comp data |
| sabl_new_areas | Sablefish defining areas for age samples |
| sabl_vessel_lengths | vessel lengths |
| sabl_waa | Sablefish fixed weights at age |
| setup_folders | Setup folder structure |
| sharks | raw data query for GOA/BSAI sharks |
| sql_filter | utility function to filter sql files |
| sql_read | utility function to read sql file |
| sql_run | utility function to run sql query |
