Man pages for agouy/straf
STR Analysis for Forensics
| about_tab | Generate "About" panel. |
| createGenind | Convert input file to genind object |
| data_Server | Generate input data tab Server. |
| data_UI | Generate input data tab UI. |
| documentation_tab | Generate "Documentation" panel. |
| file_conv_Server | Generate file conversion tab Server |
| file_conv_UI | Generate file conversion tab UI. |
| for_popgen_Server | Generate the forensic parameters and population genetics tabs... |
| for_UI | Generate the forensic parameters UI. |
| freq_to_mds | Convert allele frequencies to a format suitable for MDS... |
| get_2p2q2 | 2p2q2 |
| getFreqAllPop | Get allele frequencies for each population. |
| getFreqFromGenind | Get allele frequencies for a given population. |
| getGenepopHW | Hardy-Weinberg Equilibrium test.. |
| getGenepopLD | Pairwise Linkage Disequilibrium computation. |
| getHaploStatsAllPop | Get haplotype specific statistics for all populations |
| getHaploStatsFromGenind | Get haplotype specific statistics |
| get_hw_gp | Parse HWE test Genepop results. |
| getIndicesAllPop | Get forensics and popgen indices for all populations |
| getIndicesFromGenind | Get forensics and popgen indices for a given population |
| get_ld_gp | Parse Linkage Disequilibrium Genepop results. |
| pca_mds_Server | Generate the PCA server. |
| pca_mds_UI | Generate the PCA UI. |
| plot_hap_dist | Plot pairwise distance between haplotypes. |
| plot_hap_div | Plot Pairwise Distance between haplotypes. |
| plot_ld | Plot Pairwise Linkage Disequilibrium. |
| popgen_UI | Generate the population genetics indices UI. |
| poptree2straf | Convert a POPTREE file to a format suitable for use in STRAF |
| ref_mds_Server | Generate the reference population tab Server. |
| ref_mds_UI | Generate the reference population tab UI. |
| runStraf | Run the STRAF application |
| sidebarUI | Generate the sidebar UI. |
| straf | straf: STR Analysis for Forensics |
| straf2arlequin | Convert STRAF file to the Arlequin format. This function |
| straf2familias | Convert STRAF file to the Familias format. |
| straf2genepop | Convert STRAF file to the Genepop format. |
