| annotateDatasetEntities | Annotate the Entities in a dataset |
| annotateDatasetFeatures | Annotate the Features in a dataset |
| belongsToFeatureSpace | Tests whether each element of a vector belongs to a... |
| bitwiseParity | Compute bitwise parity over a vector or list |
| buildQueryString | Create a URL query string from a list of parameter names and... |
| coerce-GeneHive-methods | Coerce GeneHive object classes |
| coerce-io-methods | Coerce between GeneHive and io object classes |
| coerce-S4-list-method | Coerce an S4 object to a list |
| coerce-SimpleList-data.frame-method | Coerce a SimpleList object to a data frame |
| Entities | Add, delete, retrieve, update, or list Entity record(s) |
| EntityClasses | Add, delete, retrieve, update, or list EntityClass record(s) |
| exportFeatureSets | Write FeatureSet(s) to a file |
| exportWeightedFeatureSet | Write WeightedFeatureSet to a file |
| extract-methods | Extract part of a hiveEntity |
| Groups | Add, delete, or list Group record(s) |
| hiveBase | Add, delete, retrieve, update, or list record(s) |
| hiveConnection-class | Class to contain a connection handle for API calls |
| hiveDate-class | Class to contain a time/date stamp |
| hiveEntity-class | Class to contain Entity records |
| hiveEntityClass-class | Class to contain EntityClass records |
| hiveEntityClassList-class | Class to contain a list of EntityClass objects |
| hiveEntityList-class | Class to contain a list of Entity objects |
| hiveFeatureSetEntity-class | Class to describe a set of features |
| hiveFeatureSpaceEntity-class | Class to describe a feature space |
| hiveGroup-class | Class to contain data about a Group |
| hivePermissions-class | Class to contain permissions for a record |
| hiveProcessing | Pre- or post-process lists during GeneHive operations |
| hiveSlots | Get or set various slots of a S4 objects |
| hiveURL | Construct an API URL |
| hiveUser-class | Class to contain data about a User |
| hiveUserList-class | Class to contain a list of User objects |
| hiveUtilities | Utility functions used by other functions |
| hiveVariableDefinition-class | Class to contain VariableDefinition records |
| hiveVariableDefinitionCollection-class | Class to contain VariableDefinitionCollection records |
| hiveWeightedFeatureSetEntity-class | Class to describe a set of features and weights |
| hiveWorkFileID-class | Class to contain a WorkFile identifier |
| hiveWorkFileIDList-class | Class to contain a list of WorkFile identifiers |
| hiveWorkFileProperties-class | Class to contain WorkFile metadata |
| httpRequest | Submit an HTTP request |
| importFeatureSets | Upload FeatureSet(s) from a file |
| importPublication | Create a Publication record using a PubMed identifier |
| importWeightedFeatureSet | Upload WeightedFeatureSet from a file |
| imputeFeatureSpace | Impute the FeatureSpace associated with an object |
| initialize-hiveConnection | Initialize a hiveConnection object |
| initialize-hiveEntity | Initialize a hiveEntity object |
| isJSON | Test whether a string encodes valid JSON |
| length-methods | Get the length of a hiveEntity |
| listToHiveS4 | Convert a list of fields to a hive S4 object |
| Passwords | Change, check, or reset passwords |
| refreshEntityS4Class | Refresh Entity S4 class definition |
| setEntityS4Class | Set an Entity S4 class definition |
| show-methods | Methods for showing S4 objects |
| stopIfHiveError | Terminate if an HTTP response is an error message |
| translateFeatures | Translate a set of features from one feature space to another |
| Users | Add, retrieve, update, or list User record(s) |
| WorkFileProperties | Retrieve, update, or list WorkFileProperties record(s) |
| WorkFiles | Functions for working with WorkFiles |
