al-mcintyre/DEQ
A package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.

Package index
Search the al-mcintyre/DEQ package
Vignettes
Functions
18
Source code
5
Man pages
1
Home
/
GitHub
/
al-mcintyre/DEQ: A package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.
/
Files

Files in al-mcintyre/DEQ
A package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.

DESCRIPTION
LICENSE
NAMESPACE
R/count_reads.R R/import_peaks.R R/metdiff_function_copy.R R/run_deq_pipeline.R R/run_tools.R README.md
demo/heatshock_total_IP_1.chr21.star.sorted.bam
demo/heatshock_total_IP_2.chr21.star.sorted.bam
demo/heatshock_total_input_1.chr21.star.sorted.bam
demo/heatshock_total_input_2.chr21.star.sorted.bam
demo/peaks.bed
demo/untreated_total_IP_1.chr21.star.sorted.bam
demo/untreated_total_IP_2.chr21.star.sorted.bam
demo/untreated_total_input_1.chr21.star.sorted.bam
demo/untreated_total_input_2.chr21.star.sorted.bam
deq.Rproj
dispersion.pdf man/deq.Rd
al-mcintyre/DEQ documentation built on Jan. 21, 2020, 5:38 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close