API for alanrupp/dropseq3
Analyze and plot single-cell RNA-seq data using Seurat 3
| Global functions | |
|---|---|
| FindAllConservedMarkers | Source code |
| auto_clip | Source code |
| calc_youden | Source code |
| cellex | Source code |
| check_gene | Source code |
| choose_coclustering_groups | Source code |
| choose_neighbors | Source code |
| choose_resolution | Source code |
| clip_matrix | Source code |
| cluster | Source code |
| cluster_means | Source code |
| cluster_sample | Source code |
| cocluster_frequency | Source code |
| collapse_duplicate_genes | Source code |
| deScore | Source code |
| de_genes | Source code |
| dim_plot | Source code |
| dot_plot | Source code |
| doublet_umap_plot | Source code |
| downsample_matrix | Source code |
| eigengene | Source code |
| extend_table | Source code |
| filter_cells | Source code |
| find_all_conserved_markers | Source code |
| find_all_markers | Source code |
| find_conserved_markers | Source code |
| find_doublet_clusters | Source code |
| find_doublets | Source code |
| find_expressed | Source code |
| find_markers | Source code |
| find_unique_genes | Source code |
| find_variable_genes | Source code |
| flamemap | Source code |
| full_scores | Source code |
| gene_test | Source code |
| get_cells | Source code |
| get_dunn_index | Source code |
| get_gsea_scores | Source code |
| get_informative_genes | Source code |
| get_pseudotime | Source code |
| get_pseudotime_genes | Source code |
| get_silhouette_width | Source code |
| get_umap_coordinates | Source code |
| gg_color_hue | Source code |
| grab_type | Source code |
| heatmap_block | Source code |
| heatmap_plot | Source code Source code |
| integrate_data | Source code |
| keep_shared_genes | Source code |
| knee_test | Source code |
| make_pseudobulk | Source code |
| make_pseudobulk_metadata | Source code |
| merge_clusters | Source code |
| merge_markerless | Source code |
| name_clusters | Source code |
| normalize_data | Source code |
| optimize_umap | Source code |
| order_clusters | Source code |
| order_colors | Source code |
| pca | Source code |
| percent_mito | Source code |
| plot_gsea_scores | Source code |
| predict_brain_area | Source code |
| quantile_normalize | Source code |
| remove_low_abundance_genes | Source code |
| remove_unwanted_genes | Source code |
| remove_zeros | Source code |
| rename_duplicates | Source code |
| rgb_plot | Source code |
| run_WGCNA | Source code |
| run_edgeR | Source code |
| run_scran_normalize | Source code |
| run_umap | Source code |
| scale_data | Source code |
| scrublet | Source code |
| simplify_conserved_markers | Source code |
| summarize_data | Source code |
| summarize_markers | Source code |
| summarize_scores | Source code |
| traverse_tree | Source code |
| umap_plot | Source code |
| violin_plot | Source code |
