Files in albgarre/biogrowth

Modelling of Population Growth

NEWS.md R/CompareIsoGrowth_class.R R/DynamicGrowth_class.R R/FitCoupledGrowth_class.R R/FitDynamicGrowthMCMC_class.R R/FitDynamicGrowth_class.R R/FitIsoGrowth_class.R R/FitMultipleDynamicGrowth_class.R R/FitMultipleGrowthMCMC_class.R R/FitSecondaryGrowth_class.R R/FitSerial_class.R R/GlobalGrowthComparison_class.R R/GlobalGrowthFit_class.R R/GrowthFit_class.R R/GrowthPrediction_class.R R/GrowthUncertainty_class.R R/IsothermalGrowth_class.R R/MCMCcoupled_class.R R/MCMCgrowth_class.R R/S3_methods.R R/SecondaryGrowthComparison_class.R R/StochasticGrowth_class.R R/TimeDistribution_class.R R/baranyi_model.R R/biogrowth-package.R R/data.R R/fit_coupled_growth.R R/fit_dynamic_growth.R R/fit_iso_growth.R R/fit_multi_dynamic.R R/fit_secondary_models.R R/functions_counts.R R/gamma_models.R R/guess_coupled.R R/helpers.R R/initial_guesses.R R/meatinfo_primary.R R/metainfo_secondary.R R/model_comparison.R R/predictMCMC.R R/predictMCMC_coupled.R R/predict_MCMC_growth.R R/predict_dynamic_growth.R R/predict_isothermal_growth.R R/predict_stochastic_growth.R R/top_fit.R R/top_predict.R R/twofold_dilution.R README.Rmd README.md cran-comments.md man/Aryani_model.Rd man/CPM_model.Rd man/DynamicGrowth.Rd man/FitCoupledGrowth.Rd man/FitDynamicGrowth.Rd man/FitDynamicGrowthMCMC.Rd man/FitIsoGrowth.Rd man/FitMultipleDynamicGrowth.Rd man/FitMultipleGrowthMCMC.Rd man/FitSecondaryGrowth.Rd man/FitSerial.Rd man/GlobalGrowthComparison.Rd man/GlobalGrowthFit.Rd man/GrowthComparison.Rd man/GrowthFit.Rd man/GrowthPrediction.Rd man/GrowthUncertainty.Rd man/IsothermalGrowth.Rd man/MCMCcoupled.Rd man/MCMCgrowth.Rd man/Q0_to_lambda.Rd man/Rossoaw_model.Rd man/SecondaryComparison.Rd man/StochasticGrowth.Rd man/TimeDistribution.Rd man/approx_env.Rd man/arabian_tractors.Rd man/bilinear_lag.Rd man/bilinear_stationary.Rd man/biogrowth-package.Rd man/calculate_gammas.Rd man/calculate_gammas_secondary.Rd man/check_growth_guess.Rd man/check_primary_pars.Rd man/check_secondary_pars.Rd man/check_stochastic_pars.Rd man/compare_growth_fits.Rd man/compare_secondary_fits.Rd man/conditions_pH_temperature.Rd man/cost_coupled_onestep.Rd man/cost_coupled_twosteps.Rd man/dBaranyi.Rd man/distribution_to_logcount.Rd man/example_cardinal.Rd man/example_coupled_onestep.Rd man/example_coupled_twosteps.Rd man/example_dynamic_growth.Rd man/example_env_conditions.Rd man/example_od.Rd man/extract_primary_pars.Rd man/extract_secondary_pars.Rd man/fit_MCMC_growth.Rd man/fit_coupled_growth.Rd man/fit_dynamic_growth.Rd man/fit_growth.Rd man/fit_isothermal_growth.Rd man/fit_multiple_growth.Rd man/fit_multiple_growth_MCMC.Rd man/fit_secondary_growth.Rd man/fit_serial_dilution.Rd man/full_Ratkowski.Rd man/get_TTDs.Rd man/get_all_predictions.Rd man/get_dyna_residuals.Rd man/get_iso_residuals.Rd man/get_multi_dyna_residuals.Rd man/get_secondary_residuals.Rd man/greek_tractors.Rd man/growth_pH_temperature.Rd man/growth_salmonella.Rd man/inhibitory_model.Rd man/is.DynamicGrowth.Rd man/is.FitDynamicGrowth.Rd man/is.FitDynamicGrowthMCMC.Rd man/is.FitIsoGrowth.Rd man/is.FitMultipleDynamicGrowth.Rd man/is.FitMultipleDynamicGrowthMCMC.Rd man/is.FitSecondaryGrowth.Rd man/is.GlobalGrowthFit.Rd man/is.GrowthFit.Rd man/is.GrowthPrediction.Rd man/is.GrowthUncertainty.Rd man/is.IsothermalGrowth.Rd man/is.MCMCgrowth.Rd man/is.StochasticGrowth.Rd man/iso_Baranyi.Rd man/iso_Baranyi_noLag.Rd man/iso_Baranyi_noStat.Rd man/iso_repGompertz.Rd man/lambda_to_Q0.Rd man/logistic_model.Rd man/loglinear_model.Rd man/make_guess_coupled.Rd man/make_guess_factor.Rd man/make_guess_primary.Rd man/make_guess_secondary.Rd man/multiple_conditions.Rd man/multiple_counts.Rd man/multiple_experiments.Rd man/pred_coupled_baranyi.Rd man/pred_lambda.Rd man/pred_sqmu.Rd man/predictMCMC.Rd man/predictMCMC_coupled.Rd man/predict_MCMC_growth.Rd man/predict_dynamic_growth.Rd man/predict_growth.Rd man/predict_growth_uncertainty.Rd man/predict_isothermal_growth.Rd man/predict_stochastic_growth.Rd man/primary_model_data.Rd man/refrigeratorSpain.Rd man/residuals_lambda.Rd man/residuals_sqmu.Rd man/richards_model.Rd man/secondary_model_data.Rd man/show_guess_coupled.Rd man/show_guess_dynamic.Rd man/show_guess_primary.Rd man/time_to_logcount.Rd man/time_to_size.Rd man/trilinear_model.Rd man/zwietering_gamma.Rd vignettes/v01_growth_predictions.Rmd vignettes/v02_growth_fitting.Rmd vignettes/v03_growth_uncertainty.Rmd vignettes/v04_model_comparison.Rmd vignettes/v05_custom_stochastic.Rmd vignettes/v06_coupledmodels.Rmd vignettes/v07_serial_dilution.Rmd vignettes/v21_math_models.Rmd vignettes/v22_datasets.Rmd vignettes/v23_units-dilemma.Rmd vignettes/v24_publication_figures.Rmd vignettes/v31_secondary_for_static.Rmd vignettes/v99_deprecated.Rmd