Man pages for albgarre/biorisk
What the Package Does (One Line, Title Case)
| BaranyiGrowth | Growth element based on the Baranyi model |
| Beta | Beta Class |
| BetaBinomial | BetaBinomial Class |
| Binomial | Binomial Class |
| BiNormal | A element simulating a 2D normal distribution |
| CardinalParameterModel | R6 class describing the secondary Cardinal Parameter Model |
| compare_nodes | Compares the output of several nodes |
| Concentration2Dose | Concentration2Dose Class |
| Concentration2Dose_continuous | Concentration2Dose_continuous Class |
| Constant | Constant Class |
| ContinuousElement | ContinuousElement Class |
| CorrelatedExpGrowth | Growth element based on exponential growth including... |
| DiscreteElement | DiscreteElement Class |
| DiscreteGrowth | DiscreteGrowth Class |
| DiscreteGrowthNmax | DiscreteGrowthNmax Class |
| DoseResponse_BetaPoisson | DoseResponse_BetaPoisson Class |
| DoseResponse_Exponential | DoseResponse_Exponential Class |
| DynamicBigelow_1phase | R6 class describing log-linear inactivation under dynamic... |
| DynamicBigelow_2phase | R6 class describing log-linear inactivation under dynamic... |
| DynamicBigelow_3phase | R6 class describing log-linear inactivation under dynamic... |
| Dz_model | R6 class describing the secondary model for the D/z model |
| ElementDivision | ElementDivision Class |
| ElementEqualTo | ElementEqualTo Class |
| ElementExp | ElementExp Class |
| ElementGreaterEqualThan | ElementGreaterEqualThan Class |
| ElementGreaterThan | ElementGreaterThan Class |
| ElementLn | ElementLn Class |
| ElementLog | ElementLog Class |
| ElementLowerEqualThan | ElementLowerEqualThan Class |
| ElementLowerThan | ElementLowerThan Class |
| ElementMinus | ElementMinus Class |
| ElementPlus | ElementPlus Class |
| ElementPow10 | ElementPow10 Class |
| ElementPower | ElementPower Class |
| ElementSqrt | ElementSqrt Class |
| ElementTimes | ElementTimes Class |
| EmpiricalDistr | EmpiricalDistr Class |
| Exponential | Exponential Class |
| ExponentialGrowth | Growth element based on exponential growth |
| ExponentialGrowthNmax | Growth element based on exponential growth considering a... |
| FullRatkowsky_model | R6 class describing the secondary Full Ratkowsky model |
| FullRatkowsky_model_error | R6 class describing the secondary Full Ratkowsky model |
| FullRatkowsky_pH_model | R6 class describing the secondary Full Ratkowsky model... |
| Gamma | Gamma Class |
| GammaFullRatkowsky_model | R6 class describing the secondary Full Ratkowsky model with... |
| GammaPoisson | GammaPoisson Class |
| GeeraerdInactivation | R6 class describing Geeraerd inactivation model |
| GeeraerdInactivation_noSL | R6 class describing Geeraerd inactivation model without... |
| GeeraerdInactivation_noTail | R6 class describing Geeraerd inactivation model without... |
| get_data_tornado | Extract data for the tornado plot |
| get_edges | Get edges for building a graph |
| get_names | Getting the names of the nodes |
| LagExponentialGrowth | Growth model with exponential phase + lag |
| LinealModel | Lineal model |
| LnNormal | LnNormal Class |
| LogisticDistr | LogisticDistr Class |
| LogisticGrowth | Growth element based on the logistic growth model |
| LogLinInactivation | R6 class describing log-linear inactivation |
| LogLinInactivation_k | R6 class describing log-linear inactivation parameterized as... |
| LogNormal | LogNormal Class |
| MaxFilter | Filters the output of a element according to a maximum value |
| MC_convergence | Analysis of MC convergence |
| MinFilter | Filters the output of a element according to a minimum value |
| MinMaxFilter | Filters the output of a element according to both a minimum... |
| model_to_graph | Convert a model to a graph |
| modGompertzGrowth | Growth element based on the modified Gompertz model |
| Normal | Normal Class |
| Pareto | Pareto Class |
| PartitionBinomial | A element to describe partition as a binomial process |
| PartitionPoisson | A element to describe partition as a Poisson process |
| PelegInactivation | R6 class describing a Weibull inactivation model |
| Peleg_secondary | R6 class describing the secondary model for the Peleg model |
| Pert | Pert Class |
| Pill2Cases_1 | Pill2Cases_1 Class |
| Pill2Cases_N | Pill2Cases_N Class |
| plot_MC_analysis | Plot of the MC convergence analysis |
| plot_model | Plotting a model |
| plot_outputs | Makes a plot comparing the output of the chosen nodes |
| Poisson | Poisson Class |
| predict_Bigelow_biphasic | Dynamic microbial inactivation for the Bigelow model with a... |
| predict_Bigelow_ramp | Dynamic microbial inactivation for the Bigelow model with a... |
| predict_Bigelow_triphasic | Dynamic microbial inactivation for the Bigelow model with a... |
| Ratkowsky_model | R6 class describing the secondary Ratkowsky model... |
| Ratkowsky_model_error | R6 class describing the secondary Ratkowsky model... |
| regression_tree | Regression tree of the output |
| resample_vector_median | Resampling a vector with replacement several times |
| retrieve_outputs | Gets the output of all the nodes of a model |
| RichardsGrowth | Growth element based on the Richards growth model |
| RiskElement | RiskElement Class |
| tornado_plot | Tornado plot |
| Triangular | Triangular Class |
| TriangularSym | TriangularSym Class |
| TrilinealGrowth | Growth model with exponential phase + lag |
| TrilinearInactivation | R6 class describing Tri-linear inactivation |
| Uniform | Uniform Class |
| Vector | Vector Class |
| Weibull | Weibull Class |
| WeibullInactivation | R6 class describing a Weibull primary inactivation |
| ZIPoisson | ZIPoisson Class |
| ZwieteringGamma | R6 class describing the gamma coefficient using the... |
