Files in alessandrozito/BayesANT
Bayesian Nonparametric Taxonomic classifier
.DS_Store
.Rbuildignore
.gitignore
BayesANT.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/BayesANT.R
R/BayesANT_amino.R
R/RcppExports.R
R/add_novelty_to_test_data.R
R/build_CountMatrix.R
R/build_ParameterMatrix.R
R/fitPY_tree.R
R/get_2mer_counts.R
R/get_Kmer_counts.R
R/get_Priorprobs.R
R/get_nucleotide_counts.R
R/obtain_prediction.R
R/plot_accuracies.R
R/predict.BayesANT.R
R/predict_Taxonomy_aligned.R
R/predict_Taxonomy_not_aligned.R
R/read.BayesANT.library.R
R/read.BayesANT.testDNA.R
R/summary.BayesANT.R
R/tune_hyperparameters.R
R/tune_hyperparameters_MultKmers.R
README.md
docs/BayesANT_lib.bib
docs/Pitman_Yor_UrnScheme.pdf
docs/Pitman_Yor_UrnScheme.png
docs/Taxonomic_tree.pdf
docs/Taxonomic_tree.png
docs/_config.yml
docs/aminoacids.Rmd
docs/style.css
docs/vignette.Rmd
docs/vignette.html
docs/vignette_files/figure-html/unnamed-chunk-12-1.png
docs/vignette_files/figure-html/unnamed-chunk-14-1.png
docs/vignette_files/figure-html/unnamed-chunk-6-1.png
docs/vignette_files/figure-html/unnamed-chunk-9-1.png
inst/.DS_Store
inst/extdata/testDNA.fasta
inst/extdata/trainDNA.fasta
man/.DS_Store
man/BayesANT.Rd
man/BayesANT_amino.Rd
man/add_novelty_to_test_data.Rd
man/plot_accuracies.Rd
man/predict.BayesANT.Rd
man/read.BayesANT.data.Rd
man/read.BayesANT.testDNA.Rd
man/summary.BayesANT.Rd
src/.DS_Store
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/logpredictive.cpp
