API for alexchwong/NxtIRF
Graphical User Interface for High Performance BAM-based binary alternative splicing event quantitation, differential analysis, and
visualisation
| Global functions | |
|---|---|
| .check_package_installed | Source code |
| .cov_ui_inline | Source code |
| .dash_get_threads | Source code |
| .get_discrete_cats | Source code |
| .infobox_update_se | Source code |
| .log | Source code |
| .makeSE_sweetalert_error | Source code |
| .makeSE_sweetalert_finish | Source code |
| .nxtIRF_get_mappa | Source code |
| .plot_cov_validate_args | Source code |
| .plot_cov_validate_args_event | Source code |
| .plot_cov_validate_args_loci | Source code |
| .plot_cov_validate_args_se | Source code |
| .refresh_genome | Source code |
| .refresh_gtf | Source code |
| .refresh_releases | Source code |
| .refresh_species | Source code |
| .server_cov_change_event_list | Source code |
| .server_cov_change_start_end | Source code |
| .server_cov_check_plot_args | Source code |
| .server_cov_get_inrange_events | Source code |
| .server_cov_get_track_selection | Source code |
| .server_cov_locate_events | Source code |
| .server_cov_locate_genes | Source code |
| .server_cov_plot_change_mode | Source code |
| .server_cov_refresh | Source code |
| .server_cov_refresh_plot_args | Source code |
| .server_cov_refresh_track_condition | Source code |
| .server_cov_refresh_tracks_cov | Source code |
| .server_cov_update_norm_event | Source code |
| .server_cov_zoom_in | Source code |
| .server_cov_zoom_out | Source code |
| .server_expr_check_irf_path | Source code |
| .server_expr_check_ref_path | Source code |
| .server_expr_check_savestate | Source code |
| .server_expr_clear_ref | Source code |
| .server_expr_gen_HOT | Source code |
| .server_expr_load_alert_fail | Source code |
| .server_expr_load_alert_success | Source code |
| .server_expr_load_ref | Source code |
| .server_expr_load_ref_genome | Source code |
| .server_expr_load_ref_gtf | Source code |
| .server_expr_load_ref_misc | Source code |
| .server_expr_parse_collate_path | Source code |
| .server_expr_parse_collate_path_full | Source code |
| .server_expr_parse_collate_path_limited | Source code |
| .server_expr_parse_ref_path | Source code |
| .server_expr_ref_load_fail | Source code |
| .server_expr_ref_load_success | Source code |
| .server_expr_save_expr | Source code |
| .server_expr_sync_df | Source code |
| .ui_notice | Source code |
| .validate_threads | Source code |
| Expr_BAM_update_status | Source code |
| Expr_CollateData_Validate_Vars | Source code |
| Expr_IRF_actually_run | Source code |
| Expr_IRF_initiate_run | Source code |
| Expr_Load_Anno | Source code |
| Expr_Load_BAMs | Source code |
| Expr_Load_IRFs | Source code |
| Expr_Update_colData | Source code |
| Filters_Plot_Summary | Source code |
| QC_Bar_X | Source code |
| QC_Bar_Y | Source code |
| QC_PCA | Source code |
| QC_Scatter_XY | Source code |
| QC_update_plot | Source code |
| dash_server | Source code |
| filterModule_UI | Source code |
| filterModule_server | Source code |
| is.nan.data.frame | Source code |
| is_valid | Source code |
| nxtIRF | Man page Source code |
| server_DE | Source code |
| server_cov | Source code |
| server_cov_get_all_tracks | Source code |
| server_expr | Source code |
| server_filters | Source code |
| server_qc | Source code |
| server_ref_new | Source code |
| server_vis_diag | Source code |
| server_vis_heatmap | Source code |
| server_vis_volcano | Source code |
| setreactive_Cov | Source code |
| setreactive_DE | Source code |
| setreactive_Diag | Source code |
| setreactive_Heat | Source code |
| setreactive_QC | Source code |
| setreactive_expr | Source code |
| setreactive_filtered_SE | Source code |
| setreactive_newref | Source code |
| setreactive_system | Source code |
| ui_DE | Source code |
| ui_cov | Source code |
| ui_ddb_bam_path | Source code |
| ui_ddb_build_expr | Source code |
| ui_ddb_irf_path | Source code |
| ui_ddb_load_expr | Source code |
| ui_ddb_project_dir | Source code |
| ui_ddb_ref_load | Source code |
| ui_expr | Source code |
| ui_expr_limited | Source code |
| ui_filters | Source code |
| ui_infobox_bam | Source code |
| ui_infobox_expr | Source code |
| ui_infobox_irf | Source code |
| ui_infobox_ref | Source code |
| ui_qc | Source code |
| ui_ref_new | Source code |
| ui_sidebar | Source code |
| ui_tab_analyse | Source code |
| ui_tab_coverage | Source code |
| ui_tab_diag | Source code |
| ui_tab_expr | Source code |
| ui_tab_expr_load | Source code |
| ui_tab_filter | Source code |
| ui_tab_heatmap | Source code |
| ui_tab_qc | Source code |
| ui_tab_ref_new | Source code |
| ui_tab_system | Source code |
| ui_tab_title | Source code |
| ui_tab_volcano | Source code |
| ui_toggle_wellPanel | Source code |
| ui_toggle_wellPanel_modular | Source code |
| ui_vis_diag | Source code |
| ui_vis_heatmap | Source code |
| ui_vis_volcano | Source code |
| update_data_frame | Source code |
