Man pages for allgenesconsidered/RCaMP
RCaMP
| analyzeExperiment | Analyzes the experimental data. |
| checkTime | Check that the vector looks like a time vector, by checking... |
| create_new_rcamp | Create a new instance of an experiment object, which will... |
| dataframeToRCaMP | Converts a cleaned CSV to an rcamp object. |
| findMids | A funciton to identify midpoints (T50) between peaks and... |
| findMins | A funciton to identify minimal values between peaks... |
| indexesToValues | Converts the indexes (useful for storage and ploting) to... |
| moving_average | Calculate moving averages to remove noise |
| plotRawData | A generic funciton to plot intensities over time The data... |
| print.rcamp | Print function for experiement object |
| readZiessData | A funciton to handle loading in data from a Zies reading. |
| runTestGraph | Graphs peak calls, troughs (mins), and T50, T85, and T90... |
| subset_intensity_data | greps the mean intensity values, or whatever othe values you... |
| trimData | Trim seconds off the begining or end of a run |
