API for almeidasilvaf/bear
Building Expression Atlas from RNA-Seq data
| Global functions | |
|---|---|
| c_createdir | Source code |
| check_empty | Source code |
| check_md5 | Man page Source code |
| clean_sortmerna | Source code |
| create_dir_structure | Man page Source code |
| create_meta_df | Source code |
| create_sample_info | Man page Source code |
| download_from_ena | Man page Source code |
| fastp_is_installed | Man page Source code |
| fastq_exists | Man page Source code |
| featureCounts | Man page Source code |
| featureCounts2se | Man page Source code |
| get_fastq_paths | Source code |
| get_url_ena | Man page Source code |
| get_url_ena_api | Source code |
| get_url_ena_iterative | Source code |
| gff2bed | Man page Source code |
| infer_strandedness | Man page Source code |
| is_valid | Source code |
| kallisto2se | Man page Source code |
| kallisto_index | Man page Source code |
| kallisto_is_installed | Man page Source code |
| kallisto_quantify | Man page Source code |
| mapping_pass | Man page Source code |
| mapping_qc | Man page |
| multiqc_is_installed | Man page Source code |
| remove_rrna | Man page Source code |
| rrna_ref_args | Source code |
| rseqc_is_installed | Man page Source code |
| run2biosample_kallisto | Source code |
| run2biosample_salmon | Source code |
| salmon2se | Man page Source code |
| salmon_index | Man page Source code |
| salmon_is_installed | Man page Source code |
| salmon_quantify | Man page Source code |
| sample_info | Man page |
| skip | Source code |
| sortmerna_is_installed | Man page Source code |
| sra_xml2df | Source code |
| star_align | Man page Source code |
| star_genome_index | Man page Source code |
| star_is_installed | Man page Source code |
| star_reads | Source code |
| stringtie2se | Man page Source code |
| stringtie_assemble | Man page Source code |
| stringtie_is_installed | Man page Source code |
| stringtie_quantify | Man page Source code |
| subread_is_installed | Man page Source code |
| summary_stats_fastp | Man page Source code |
| summary_stats_salmon | Man page Source code |
| summary_stats_star | Man page Source code |
| taco_clean | Source code |
| taco_is_installed | Man page Source code |
| taco_merge | Man page Source code |
| translate_strandedness | Man page Source code |
| trim_reads | Man page Source code |
| tx2gene | Man page |
| valid_url | Source code |
| var2list | Source code |
