Files in alxsrobert/o2geosocial
Reconstruction of Transmission Chains from Surveillance Data
.Rbuildignore
.github/workflows/rhub.yaml
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/add_convolutions.R
R/bind_moves.R
R/create_config.R
R/create_param.R
R/custom_likelihoods.R
R/custom_moves.R
R/custom_priors.R
R/doc_data.R
R/modify_defaults.R
R/outbreaker.R
R/outbreaker_data.R
R/outbreaker_find_imports.R
R/outbreaker_init_mcmc.R
R/outbreaker_mcmc_shape.R
R/outbreaker_mcmc_store.R
R/outbreaker_move.R
R/plot_importation.R
R/pre_clustering.R
R/summary.outbreaker_chains.R
R/zzz.R
README.md
appveyor.yml
data/toy_outbreak_long.RData
data/toy_outbreak_short.RData
inst/include/o2geosocial.h
inst/include/o2geosocial_RcppExports.h
man/create_config.Rd
man/create_param.Rd
man/custom_likelihoods.Rd
man/custom_moves.Rd
man/custom_priors.Rd
man/outbreaker.Rd
man/outbreaker_chains.Rd
man/outbreaker_data.Rd
man/pre_clustering.Rd
man/toy_outbreak_long.Rd
man/toy_outbreak_short.Rd
src/RcppExports.cpp
src/internals.cpp
src/internals.h
src/likelihoods.cpp
src/likelihoods.h
src/moves.cpp
src/moves.h
src/priors.cpp
src/priors.h
tests/testthat.R
tests/testthat/test_config.R
tests/testthat/test_data.R
tests/testthat/test_likelihood.R
tests/testthat/test_moves.R
tests/testthat/test_outbreaker.R
tests/testthat/test_preclust.R
tests/testthat/test_priors.R
vignettes/Figs_vignette/Vignette_figure_1.jpg
vignettes/o2geosocial.Rmd
