Files in amitjavilaventura/chromHMMviewR
Visualize ChromHMM Outputs In R
.DS_Store
.Rbuildignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/emission2heatmap.R
R/neigbor2heatmap.R
R/overlap2heatmap.R
R/transition2heatmap.R
README.md
_pkgdown.yml
chromHMMviewR.Rproj
demodata/.DS_Store
demodata/conditionX_8_RefSeqTES_neighborhood.png
demodata/conditionX_8_RefSeqTES_neighborhood.txt
demodata/conditionX_8_RefSeqTSS_neighborhood.png
demodata/conditionX_8_RefSeqTSS_neighborhood.txt
demodata/conditionX_8_overlap.png
demodata/conditionX_8_overlap.txt
demodata/conditionX_8_segments.bed
demodata/emissions_8.png
demodata/emissions_8.txt
demodata/transitions_8.png
demodata/transitions_8.txt
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/01-emission2hm.html
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-10-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-11-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-5-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-6-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-7-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-8-1.png
docs/articles/01-emission2hm_files/figure-html/unnamed-chunk-9-1.png
docs/articles/01-emission2hm_files/header-attrs-2.7/header-attrs.js
docs/articles/02-transition2hm.html
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-10-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-11-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-5-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-6-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-7-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-8-1.png
docs/articles/02-transition2hm_files/figure-html/unnamed-chunk-9-1.png
docs/articles/02-transition2hm_files/header-attrs-2.7/header-attrs.js
docs/articles/03-overlap2hm.html
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-10-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-11-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-12-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-6-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-7-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-8-1.png
docs/articles/03-overlap2hm_files/figure-html/unnamed-chunk-9-1.png
docs/articles/03-overlap2hm_files/header-attrs-2.7/header-attrs.js
docs/articles/04-neighbor2hm.html
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-10-1.png
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-11-1.png
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-6-1.png
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-7-1.png
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-8-1.png
docs/articles/04-neighbor2hm_files/figure-html/unnamed-chunk-9-1.png
docs/articles/04-neighbor2hm_files/header-attrs-2.7/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/data/emissions_8.png
docs/demodata/conditionX_8_RefSeqTSS_neighborhood.png
docs/demodata/conditionX_8_overlap.png
docs/demodata/emissions_8.png
docs/demodata/transitions_8.png
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/emission2hm.html
docs/reference/enrich2hm.html
docs/reference/figures/logo.png
docs/reference/index.html
docs/reference/neighbor2hm.html
docs/reference/overlap2hm.html
docs/reference/transition2hm.html
logo.png
man/emission2hm.Rd
man/figures/logo.png
man/neighbor2hm.Rd
man/overlap2hm.Rd
man/transition2hm.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
