Man pages for andrewholding/ZMIZ1
ZMZI1 Manuscript Figures
| annotategene | annotate gene This function converts a EntrezID to a Gene... |
| annotationTable | Metadata for RNA-seq time course |
| any2entrez | Any to Entrez This function converts a anything to Entrez ID |
| eg2ens | Entrez 2 Ensemble This function converts a Entrez ID to... |
| eg2refseq | Entrez 2 RegSeq This function converts a Entrez ID to RefSeq |
| eg2sym | Entrez 2 Symbol This function converts a Entrez ID to Gene... |
| ens2eg | Ensemble 2 Entrez This function converts a Ensemble ID to... |
| expmat_brca_a | First half of the TCGA Breast Cancer Expression Matrix |
| expmat_brca_b | Second half of the TCGA Breast Cancer Expression Matrix |
| expmat_metabric | METABRIC Breast Cancer Expression Matrix |
| figure1b_qPlexRIME | Figure 1b |
| figure2a_PLA | Figure 2a |
| figure3c_ChIPqPCR | Figure 3c |
| figure3e_E2F2Timecourse | Figure 3e |
| figure4_cellGrowth | Figure 4 |
| figure5c_VIPER | Figure 5c This function allows you generate figure4 - ER and... |
| figure5e_ki67 | Figure 5e This function allows you generate figure4e - ZMIZ1... |
| figure_removed_2c | Figure 2c |
| figureS11 | Figure S11 |
| figureS12_E2_gene_set_volcano | Figure S12 |
| figureS13mcf7 | Figure S13mcf7 |
| figureS13t47d | Figure S13t47d |
| figureS14_Survival_METABRIC | Figure S14_Survival_METABRIC |
| figureS14_Survival_TCGA | Figure S14_Survival_TCGA |
| figureS15_METABRIC | Figure S15 |
| figureS15_TCGA | Figure S15 TCGA |
| figureS2 | Figure S2 |
| figureS9_siZMIZ1_ESR1_ZMIZ1_reads | Figure S9 |
| msigdb | MSigDB gene sets. |
| proteinData | MSigDB gene sets. |
| rawcounts | RNA-seq time course data |
| subtypes_brca | TCGA samples subtype metadata |
| subtypes_metabric | METABRIC samples subtype metadata |
| sym2eg | Symbol 2 Entrez This function converts a gene symbol to... |
| vipermat_brca | VIPER Activity Matrix for TCGA BRCA patient samples. |
| vipermat_metabric | VIPER Activity Matrix for METABRIC patient samples. |
