Files in anthonysena/CohortGenerator
Cohort Generation for the OMOP Common Data Model

.Rbuildignore

.github/workflows/R_CMD_check_Hades.yaml

.github/workflows/R_CMD_check_main_weekly.yaml

.github/workflows/nightly_cleanup_Hades.yml

.gitignore

CRAN-SUBMISSION

CohortGenerator.Rproj

DESCRIPTION

NAMESPACE

NEWS.md R/CohortConstruction.R R/CohortCount.R R/CohortDefinitionSet.R R/CohortGenerator.R R/CohortSample.R R/CohortStats.R R/CohortTables.R R/CsvHelper.R R/Export.R R/Incremental.R R/NegativeControlCohorts.R R/ResultsDataModel.R R/RunCohortGeneration.R R/SubsetDefinitions.R R/SubsetQueryBuilders.R R/Subsets.R README.md

_pkgdown.yml

compare_versions

cran-comments.md

deploy.sh

docs/404.html

docs/articles/CreatingCohortSubsetDefinitions.html

docs/articles/GeneratingCohorts.html

docs/articles/GeneratingCohorts_files/header-attrs-2.10/header-attrs.js

docs/articles/GeneratingCohorts_files/header-attrs-2.11/header-attrs.js

docs/articles/SamplingCohorts.html

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

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docs/reference/createDemographicSubset.html

docs/reference/createEmptyCohortDefinitionSet.html

docs/reference/createEmptyCohortSet.html

docs/reference/createEmptyNegativeControlOutcomeCohortSet.html

docs/reference/createLimitSubset.html

docs/reference/createResultsDataModel.html

docs/reference/createSubsetCohortWindow.html

docs/reference/dot-readCsv.html

docs/reference/dot-writeCsv.html

docs/reference/dropCohortStatsTables.html

docs/reference/exportCohortStatsTables.html

docs/reference/generateCohort.html

docs/reference/generateCohortSet.html

docs/reference/generateNegativeControlOutcomeCohorts.html

docs/reference/getCohortCounts.html

docs/reference/getCohortDefinitionSet.html

docs/reference/getCohortInclusionRules.html

docs/reference/getCohortStats.html

docs/reference/getCohortTableNames.html

docs/reference/getDataMigrator.html

docs/reference/getRequiredTasks.html

docs/reference/getResultsDataModelSpecifications.html

docs/reference/getSubsetDefinitions.html

docs/reference/index.html

docs/reference/insertInclusionRuleNames.html

docs/reference/isCamelCase.html

docs/reference/isCohortDefinitionSet.html

docs/reference/isFormattedForDatabaseUpload.html

docs/reference/isSnakeCase.html

docs/reference/isTaskRequired.html

docs/reference/migrateDataModel.html

docs/reference/readCsv.html

docs/reference/recordTasksDone.html

docs/reference/runCohortGeneration.html

docs/reference/sampleCohortDefinitionSet.html

docs/reference/saveCohortDefinitionSet.html

docs/reference/saveCohortSubsetDefinition.html

docs/reference/saveIncremental.html

docs/reference/sqlContainsInclusionRuleStats.html

docs/reference/uploadResults.html

docs/reference/writeCsv.html

docs/search.json

docs/sitemap.xml

extras/CohortGenerator.pdf extras/CreateResultsForUpload.R extras/PackageMaintenance.R

inst/csv/resultsDataModelSpecification.csv

inst/doc/CreatingCohortSubsetDefinitions.pdf inst/doc/GeneratingCohorts.pdf inst/doc/SamplingCohorts.pdf

inst/sql/sql_server/CohortCounts.sql

inst/sql/sql_server/CreateCohortTables.sql

inst/sql/sql_server/CreateResultsDataModel.sql

inst/sql/sql_server/NegativeControlOutcomes.sql

inst/sql/sql_server/migrations/Migration_1-v0.10.0.sql

inst/sql/sql_server/sampling/RandomSample.sql

inst/sql/sql_server/subsets/CohortSubsetDefinition.sql

inst/sql/sql_server/subsets/CohortSubsetOperator.sql

inst/sql/sql_server/subsets/DemographicSubsetOperator.sql

inst/sql/sql_server/subsets/LimitSubsetOperator.sql

inst/testdata/Results_Eunomia.zip

inst/testdata/id/Cohorts.csv

inst/testdata/id/cohorts/1.json

inst/testdata/id/cohorts/2.json

inst/testdata/id/cohorts/3.json

inst/testdata/id/cohorts/4.json

inst/testdata/id/sql/sql_server/1.sql

inst/testdata/id/sql/sql_server/2.sql

inst/testdata/id/sql/sql_server/3.sql

inst/testdata/id/sql/sql_server/4.sql

inst/testdata/invalid/Cohorts.csv

inst/testdata/name/Cohorts.csv

inst/testdata/name/cohorts/celecoxib.json

inst/testdata/name/cohorts/celecoxibAge40.json

inst/testdata/name/cohorts/celecoxibAge40Male.json

inst/testdata/name/cohorts/celecoxibCensored.json

inst/testdata/name/sql/sql_server/celecoxib.sql

inst/testdata/name/sql/sql_server/celecoxibAge40.sql

inst/testdata/name/sql/sql_server/celecoxibAge40Male.sql

inst/testdata/name/sql/sql_server/celecoxibCensored.sql

inst/testdata/negativecontrols/negativeControlOutcomes.csv

anthonysena/CohortGenerator documentation built on June 14, 2025, 5:48 a.m.

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Cohort Generation for the OMOP Common Data Model

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Cohort Generation for the OMOP Common Data Model

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anthonysena/CohortGenerator
Cohort Generation for the OMOP Common Data Model

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Cohort Generation for the OMOP Common Data Model