Files in antoine186/convSig
Mutational Process Inference via Expectation Maximisation
.R/Makevars.txt
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/All_Classes.R
R/Auxiliary_Func.R
R/Auxiliary_Func2.R
R/Conv_Sort_Rm_Shallow.R
R/Conv_Sort_Rm_VCF.R
R/EMu_prepare.R
R/RcppExports.R
R/Read_VCF.R
R/Rev_EMu_prepare.R
R/Shallow_Exp.R
R/Shallow_ReLU.R
README.md
data/example_mutation_dataset.rda
man/conv_create.Rd
man/exp_transform.Rd
man/icgc2mut.Rd
man/icgc_curate.Rd
man/icgc_sort.Rd
man/linreg_solver.Rd
man/mut_count.Rd
man/mut_process35.Rd
man/read_vcf.Rd
man/readfast.Rd
man/readmut.Rd
man/relu_transform.Rd
man/vcf2mut.Rd
src/.gitignore
src/AuxSimulation.cpp
src/Chrom_Loops.cpp
src/RcppExports.cpp
src/ReLU_Loops.cpp
src/Shallow_Loops.cpp
src/VcfBackend.cpp
src/testscript.cpp
tests/testthat.R
tests/testthat/example_mutation_dataset.csv
tests/testthat/example_mutation_dataset.tsv
tests/testthat/result_mutation_dataset.tsv
tests/testthat/test.ICGC2Mut.R
tests/testthat/test.ReLU.R
tests/testthat/test.ShallowPrep.R
vignettes/.gitignore
vignettes/convSig-vignette.Rmd
